Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_C17
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 91 7e-20
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 40 1e-04
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 33 0.016
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 29 0.26
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 29 0.34
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 0.60
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 0.60
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 1.0
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 27 1.0
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 27 1.4
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 1.4
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 26 3.2
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 25 4.2
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 25 4.2
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 25 4.2
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 5.6
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 7.3
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 7.3
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 25 7.3
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 25 7.3
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 7.3
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 24 9.7
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 91.1 bits (216), Expect = 7e-20
Identities = 52/149 (34%), Positives = 82/149 (55%)
Frame = +2
Query: 14 ERAEAMKRVDKLNEHIRSSEQALEEQRRLRAELQADVGECRGRAAELQSQLEEVAAQLGD 193
ERA+ + K+NE I S E +Q++ R E + EL +L+ ++ +
Sbjct: 442 ERADLLA---KINEKIESLELEKHDQQKKRLTYS----ELFHKTQELNEELQSCLQKILE 494
Query: 194 ARIDKHEEARRRKKQEIVESFKRDIPGVYDRMINMCQPTHKRYNVAITKVLGKYMEAIVV 373
A D++E + KK+E + + KR P V R+I++C PT K+Y AI LGK +AIVV
Sbjct: 495 ASADRNESKQDAKKREALYALKRIYPEVKGRIIDLCTPTQKKYESAIAAALGKNFDAIVV 554
Query: 374 DTEKTARRCIQVLKEKMLEPETFLPLDYI 460
+T+ A+ CI +KE+ + TF P+D I
Sbjct: 555 ETQAVAKECIDYIKEQRIGIMTFFPMDTI 583
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 40.3 bits (90), Expect = 1e-04
Identities = 32/140 (22%), Positives = 62/140 (44%)
Frame = +2
Query: 35 RVDKLNEHIRSSEQALEEQRRLRAELQADVGECRGRAAELQSQLEEVAAQLGDARIDKHE 214
R+ +L +I S + E R L + + + ++ L LG +D++
Sbjct: 447 RMSQLLANITSINERKENLTDKRKSLWREEAKLKSSIENVKDDLSRSEKALGTT-MDRNT 505
Query: 215 EARRRKKQEIVESFKRDIPGVYDRMINMCQPTHKRYNVAITKVLGKYMEAIVVDTEKTAR 394
R ++I E K + G Y + + + R+ VA+ G + IVVD ++TA
Sbjct: 506 SNGIRAVKDIAERLK--LEGYYGPLCELFK-VDNRFKVAVEATAGNSLFHIVVDNDETAT 562
Query: 395 RCIQVLKEKMLEPETFLPLD 454
+ + V+ ++ TF+PL+
Sbjct: 563 QILDVIYKENAGRVTFMPLN 582
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 33.5 bits (73), Expect = 0.016
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +2
Query: 74 QALEEQRRLRAELQADVGECRGRAAELQSQLEEVA-AQLGDARIDKHEEARRRKKQEI 244
Q + E++R R E + + E R AE + +L EV A+ +AR+ K E+ R+KK+E+
Sbjct: 251 QKMLEEKRAREEEEQRIREEEARIAEEEKRLAEVEEARKEEARLKKKEK-ERKKKEEM 307
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 29.5 bits (63), Expect = 0.26
Identities = 20/75 (26%), Positives = 39/75 (52%)
Frame = +2
Query: 35 RVDKLNEHIRSSEQALEEQRRLRAELQADVGECRGRAAELQSQLEEVAAQLGDARIDKHE 214
++ +NE+I ++E + E D+ + RG+A EL++ L +L D + +E
Sbjct: 303 QLQTVNENITRISTSIELKNTALEEEHGDLQQIRGKAKELETLLRGKRKRL-DEVLSVYE 361
Query: 215 EARRRKKQEIVESFK 259
+ R+ + Q I + FK
Sbjct: 362 K-RKDEHQSISKDFK 375
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 29.1 bits (62), Expect = 0.34
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 140 RAAELQSQLEE-VAAQLGDARIDKHEEARRRKKQE 241
RA + Q + E+ VAA+L DARI + +E RR +E
Sbjct: 855 RAIQAQIEYEKSVAAKLEDARIQREKEKARRLAEE 889
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 0.60
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +2
Query: 14 ERAEAMKRVDKLNEHIRSSEQALEEQRRLRAELQADVGECRGRAAELQSQLEEVAAQLGD 193
+ E + VD+ + + EQ +EE RR+ A + E R LQ+ E+VA Q
Sbjct: 515 DEEEDEEDVDEDELDLMTDEQRMEEGRRMFQIFAARLFEQR----VLQAYREKVAQQRQA 570
Query: 194 ARIDKHEEARRRKKQEIVESFK 259
+++ EE +RK++ ++ +
Sbjct: 571 KLLEEIEEENKRKQERELKKIR 592
Score = 27.5 bits (58), Expect = 1.0
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +2
Query: 17 RAEAMKRVDKLNEHIRSSEQALEE-QRRLRAELQADVGECRGRAAELQSQLEEVAAQLGD 193
+ E K+ +L R +Q +E +++L+ + Q E R L+ + E+ +
Sbjct: 647 KREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERK 706
Query: 194 AR--IDKHEEARRRKKQEIVESFKRD 265
R +DK EE RRR++ ES +++
Sbjct: 707 RREKLDKEEEERRRRELLEKESEEKE 732
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 0.60
Identities = 32/135 (23%), Positives = 56/135 (41%)
Frame = +2
Query: 41 DKLNEHIRSSEQALEEQRRLRAELQADVGECRGRAAELQSQLEEVAAQLGDARIDKHEEA 220
D+ + I S Q ++ + L+ D G+ EL+ ++E++ A L + + +E
Sbjct: 1256 DQTDTPIISGSQEVQLLYESNSVLRKDNDAKLGKIQELEKEVEKLNASLNPLQTEINE-- 1313
Query: 221 RRRKKQEIVESFKRDIPGVYDRMINMCQPTHKRYNVAITKVLGKYMEAIVVDTEKTARRC 400
K EI G +N+ + + R+ + VL KY E+ + C
Sbjct: 1314 ---LKAEI---------GAKTASLNLMKEYNSRWKLRFQSVLNKYERVDPTQLEELKKNC 1361
Query: 401 IQVLKEKMLEPETFL 445
+ KEK E ET L
Sbjct: 1362 EALEKEKQ-ELETKL 1375
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.5 bits (58), Expect = 1.0
Identities = 28/147 (19%), Positives = 62/147 (42%), Gaps = 9/147 (6%)
Frame = +2
Query: 38 VDKLNEHIRSSEQALEEQRRLRAELQADVGECRGRAAELQSQLEEVAAQLGDARIDKHEE 217
+DKL + L + ++ ++L+ + + + + L R E
Sbjct: 565 LDKLRNDAEENRNILSSKLKVLSDLKGEKKDVSKNIERKKETVHNTYRNLMSNRTKLEEM 624
Query: 218 ----ARRRKKQEIVESFKR-----DIPGVYDRMINMCQPTHKRYNVAITKVLGKYMEAIV 370
+ R + ++ES +R ++ G + R+ ++ + Y+VAI+ + IV
Sbjct: 625 KASLSSSRSRGNVLESLQRLHESDNLNGFFGRLGDLAT-IDEAYDVAISTACPA-LNHIV 682
Query: 371 VDTEKTARRCIQVLKEKMLEPETFLPL 451
VD +T ++C+ L+ L +F+ L
Sbjct: 683 VDNIETGQKCVAFLRSNNLGRASFIIL 709
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 27.5 bits (58), Expect = 1.0
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 38 VDKLNEHIRSSEQALEEQRRLRAELQADVGECRGRAAELQSQLEEVAAQLGDARIDKHE 214
V+K E ++ A + +RAEL+A+ +C+ RA + +E V + HE
Sbjct: 358 VEKCAELAILTKAANDGPASVRAELEANAADCKARAESPITNVEAVRERQSKVTPQMHE 416
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 392 RRCIQVLKEKMLEPETFLPLDYI 460
R+ + +K K L ETFL LDYI
Sbjct: 129 RQFVNGIKSKYLSKETFLNLDYI 151
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/43 (27%), Positives = 28/43 (65%)
Frame = +2
Query: 41 DKLNEHIRSSEQALEEQRRLRAELQADVGECRGRAAELQSQLE 169
+KLNE +++S+ LEEQ +L + ++ + + + +L+ +L+
Sbjct: 634 EKLNESLKTSKTNLEEQTQLAEKYHEELLDNQQKLYDLRIELD 676
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 1.8
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 2 HEGHERAEAMKRVDKLNEHIRSSEQALEEQRRLRAELQADVGECRGRAAELQS 160
++ HE+ E + ++K I +Q LEE + EC+ R EL++
Sbjct: 298 NQTHEQKELINSLEKKVSDIALEKQLLEEAVERYKLAMVEFAECQRRLKELEA 350
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 3.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Frame = +2
Query: 44 KLNEHIRSSEQALEEQRRLRAELQAD--------VGECRGRAAELQSQLEEVAAQLGD 193
KLNE R+ +ALE + L +LQ D E R E ++ L++ +LG+
Sbjct: 24 KLNEKRRALRKALEGNKELNKDLQEDSQLQKDYKYDESRATQEETETNLDDEYHRLGE 81
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 74 QALEEQRRLRAELQADVGECRGRAAELQSQLEEVAAQLGDARIDKHEEARR 226
+A +E + LRAE + + EL+ + E+AAQ A++D+ A++
Sbjct: 464 EANKEFQLLRAEREERRRYIETSSRELEDKDAEIAAQAYKAKVDQDTSAKQ 514
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 4.2
Identities = 18/91 (19%), Positives = 40/91 (43%)
Frame = +2
Query: 50 NEHIRSSEQALEEQRRLRAELQADVGECRGRAAELQSQLEEVAAQLGDARIDKHEEARRR 229
+E + +QA+ +++ + + ++A+ +Q E + +L + HE + R
Sbjct: 13 HEELERLQQAIVDRQVANPKAPRERLRLEHQSAQFLNQFRETSKKL----LVSHESSDRL 68
Query: 230 KKQEIVESFKRDIPGVYDRMINMCQPTHKRY 322
K QE+ D + + + Q HK+Y
Sbjct: 69 KDQEVARINADDDLTEFYKSLGEIQEFHKKY 99
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 4.2
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 65 SSEQALEEQR-RLRAELQAD-VGECRGRAAELQSQLEEVAAQLGDARIDKHEE 217
+S ++EE + R+R + D +G+ + EL QLE + AQL ++ +D +E
Sbjct: 62 TSALSVEEAKFRVREKQYQDTIGKLQKENNELLEQLEMLQAQLKNSTLDSPKE 114
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 14 ERAEAMK-RVDKLNEHIRSSEQALEEQRR 97
+ +E++K RVD LN++I + ++E RR
Sbjct: 369 QNSESLKSRVDNLNDYITKLQNEIDECRR 397
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 370 NYRLHVLAEHFRDGDVVPLVRRLAHVD 290
+Y L V + FR G+VVP+ R +D
Sbjct: 350 HYELQVSGKSFRLGEVVPITFRFLLLD 376
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/47 (21%), Positives = 20/47 (42%)
Frame = -2
Query: 426 SIFSFRTCMHRRAVFSVSTTIASMYLPSTFVMATLYRLCVGWHMLIM 286
S+ HR S T +A+ Y + + + +CV W + ++
Sbjct: 616 SLVPLNNLFHRAYKSSSRTHLANRYFTADYARLQINDMCVSWGLWLL 662
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 179 AQLGDARIDKHEEARRRKKQEIV-ESFKRDIPGV 277
A +G+ ++KH ++ R KQE+ E +RD+ V
Sbjct: 152 ANVGERWLEKHLQSVGRTKQELAHELLRRDMTAV 185
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 7.3
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = +2
Query: 344 LGKYMEAIVVDTEKTARRCIQVLK 415
+GKY +A++VD C+ + +
Sbjct: 391 VGKYWDALIVDLSAETHSCVDIFE 414
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 24.6 bits (51), Expect = 7.3
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +2
Query: 32 KRVDKLNEHIRSSE--QALEE-QRRLRAELQADVGECRGRAAELQSQLEEVAAQLGDARI 202
K ++KL E + ++ +AL+ Q +RAE ++ + R R ELQ + E ++G
Sbjct: 461 KNLEKLIELVETTIDLEALDSHQYIIRAEFDEELLDLRQRLDELQHSIFEEHKRVGS--- 517
Query: 203 DKHEEARRR 229
D H++ ++
Sbjct: 518 DLHQDTEKK 526
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 24.2 bits (50), Expect = 9.7
Identities = 22/117 (18%), Positives = 47/117 (40%)
Frame = +2
Query: 35 RVDKLNEHIRSSEQALEEQRRLRAELQADVGECRGRAAELQSQLEEVAAQLGDARIDKHE 214
R+ ++++ + +SEQ + R AEL++ + + +LE+ + D D
Sbjct: 931 RLFEISKQLDNSEQENNKFRERIAELESHLSNYAEAKLAQERELEQTRVLISDQSQDGEL 990
Query: 215 EARRRKKQEIVESFKRDIPGVYDRMINMCQPTHKRYNVAITKVLGKYMEAIVVDTEK 385
+ +K+ + + ++ R +N R N + L Y IV T +
Sbjct: 991 KELLEEKENALIMMEEEM-----RQVNDANTELLRVNATLKSQLKNYDMIIVEQTSQ 1042
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,157
Number of Sequences: 5004
Number of extensions: 22223
Number of successful extensions: 114
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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