Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C15
         (177 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    23   4.1  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    22   9.4  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    22   9.4  

>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 17  SSVNVKAVKEKRTRSKSKGRLTRSKPLEN 103
           S VNV+ +   R +SKS+ +++ S PLE+
Sbjct: 167 SDVNVQMLA--RLKSKSRQKISSSDPLED 193


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 20  SVNVKAVKEKRTRSKSKGRLTRSKPLENRK 109
           SVN      K  RS +K   TRS+P   RK
Sbjct: 267 SVNSPPSTYKHRRSLNKSFATRSEPQTPRK 296


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 8   EAMSSVNVKAVKEKRTRSKSKGRLTRSKPLEN 103
           E  S+ NVKA   K   +     LT S PLEN
Sbjct: 118 ELRSTTNVKAGVTKAVPNVHDRVLTISGPLEN 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 435,730
Number of Sequences: 5004
Number of extensions: 3935
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)