Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C15
         (177 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034969-1|AAH34969.1| 1007|Homo sapiens PRP4 pre-mRNA processin...    28   4.7  
AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protei...    28   4.7  
AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processin...    28   4.7  
AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processin...    28   4.7  
AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein.          28   4.7  
AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein.     28   4.7  

>BC034969-1|AAH34969.1| 1007|Homo sapiens PRP4 pre-mRNA processing
           factor 4 homolog B (yeast) protein.
          Length = 1007

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  SSVNVKAVKEKRTRSKSKGRLTRSKPLENRKT 112
           S   ++ VKEK TRSKSK R     P +  K+
Sbjct: 201 SKGGIEIVKEKTTRSKSKERKKSKSPSKRSKS 232


>AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protein
           kinase protein.
          Length = 1007

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  SSVNVKAVKEKRTRSKSKGRLTRSKPLENRKT 112
           S   ++ VKEK TRSKSK R     P +  K+
Sbjct: 201 SKGGIEIVKEKTTRSKSKERKKSKSPSKRSKS 232


>AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processing
           factor 4 homolog B (yeast) protein.
          Length = 1007

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  SSVNVKAVKEKRTRSKSKGRLTRSKPLENRKT 112
           S   ++ VKEK TRSKSK R     P +  K+
Sbjct: 201 SKGGIEIVKEKTTRSKSKERKKSKSPSKRSKS 232


>AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processing
           factor 4 homolog B (yeast) protein.
          Length = 1007

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  SSVNVKAVKEKRTRSKSKGRLTRSKPLENRKT 112
           S   ++ VKEK TRSKSK R     P +  K+
Sbjct: 201 SKGGIEIVKEKTTRSKSKERKKSKSPSKRSKS 232


>AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein.
          Length = 1007

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  SSVNVKAVKEKRTRSKSKGRLTRSKPLENRKT 112
           S   ++ VKEK TRSKSK R     P +  K+
Sbjct: 201 SKGGIEIVKEKTTRSKSKERKKSKSPSKRSKS 232


>AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein.
          Length = 1028

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  SSVNVKAVKEKRTRSKSKGRLTRSKPLENRKT 112
           S   ++ VKEK TRSKSK R     P +  K+
Sbjct: 222 SKGGIEIVKEKTTRSKSKERKKSKSPSKRSKS 253


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,378,584
Number of Sequences: 237096
Number of extensions: 124631
Number of successful extensions: 376
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 76,859,062
effective HSP length: 38
effective length of database: 67,849,414
effective search space used: 1356988280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)