Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C14
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    32   0.045
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    32   0.045
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    31   0.078
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    30   0.18 
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    29   0.32 
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    29   0.55 
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    29   0.55 
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    28   0.96 
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   1.3  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    27   1.7  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   2.9  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   2.9  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.9  
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    25   5.1  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   6.8  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   9.0  
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.0  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 402 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRS 518
           +L VSN+ F ++D D++ +F  FG ++   +  D   RS
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRS 379


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +3

Query: 381 AITTGPSKLLVSNLDFGVSDSDIQELF-SEFGILKSAAVHYDRSGRS 518
           ++ +  SK++VSNL   V+++ ++ELF    G  K  ++ Y  +GRS
Sbjct: 49  SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRS 95


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 31.5 bits (68), Expect = 0.078
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 405 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRS 518
           + V NL +  SD ++ +LF++ G +  A + Y+ +GRS
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRS 319


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 387 TTGPSKLLVSNLDFGV--SDSDIQELFSEFGILKSAAV 494
           T  P  L V NLD  +  +   ++ELFS+FG +KS  +
Sbjct: 415 TIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTL 452


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 396 PSKLL-VSNLDFGVSDSDIQELFSEFGILK 482
           PS +L V NLDF  +D+D++E F + G ++
Sbjct: 226 PSSILFVGNLDFETTDADLKEHFGQVGQIR 255


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +3

Query: 417 NLDFGVSDSDIQELFSEFGILKSAAVHY 500
           +LD  V D DIQ LFS F I KS   +Y
Sbjct: 473 SLDETVCDKDIQALFSIFNINKSVDQYY 500


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 405 LLVSNLDFGVSDSDIQELFSEFG 473
           + + NLDF +++ DI  +FSEFG
Sbjct: 33  IYIGNLDFDLNEDDILCVFSEFG 55


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 405 LLVSNLDFGVSDSDIQELFSEFGILK 482
           L VSNL  G S S I  LFS +G +K
Sbjct: 2   LYVSNLPVGTSSSAIHALFSAYGNVK 27


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +3

Query: 381 AITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGR 515
           A+    + + + NLD  +++ +  +LF +FG + S ++  D++ +
Sbjct: 255 ALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK 299


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 405 LLVSNLDFGVSDSDIQELFSEFGIL 479
           LLV N  +G S  ++  LFS FG L
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGEL 532


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 267 CLAILHLSGYYEIHHHVLVFCLYQIFCQHH 178
           CLA++ L  YY++H H+L   +     Q H
Sbjct: 381 CLALMILCLYYDLHMHLLAHPISLSASQSH 410


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 392 CCDSTTSWNLPFTKIIEHVMFPCAVN 315
           CC+S  ++N+P +  I++ M  C  N
Sbjct: 833 CCESVNNFNVPCSATIQNDMVVCRSN 858


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 325 HGNMTCSMILVKGRFQEVVLSQQVPQS 405
           HG + C++IL KG      +S Q PQ+
Sbjct: 149 HGTILCALILCKGMLHFDSISFQSPQN 175


>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 393 GPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGR 515
           GP+ +++ NL  G S  D+      FG + +  V+ D  G+
Sbjct: 98  GPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVN-DSQGK 137


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 408 LVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGR 515
           LV    FGV++ D  E+  E    K   + YD+ GR
Sbjct: 660 LVWRRHFGVNNMDPDEIQEENATGKQVLLGYDKDGR 695


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 91  VKYNNF*IQVNLNVKYNNFGTHKQF*Y 11
           +K +N  +  NLNVK  +FGT   F Y
Sbjct: 365 IKLDNIMLDENLNVKIIDFGTAFVFHY 391


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 418 LETNSFEGPVVIAPLLGTFLSPKSLNM 338
           L  N  E PV+ A   G F+ P  LN+
Sbjct: 143 LRLNGSEPPVLCAKASGFFVEPSKLNL 169


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/34 (23%), Positives = 23/34 (67%)
 Frame = +3

Query: 405 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR 506
           ++V+ +    ++  +++LF++FG +K+  ++ DR
Sbjct: 12  IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDR 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,884
Number of Sequences: 5004
Number of extensions: 39376
Number of successful extensions: 108
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)