Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_C13
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 26 3.6
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 26 3.6
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 26 3.6
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 4.8
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 25 8.4
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.4
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 25 8.4
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 8.4
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 25 8.4
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 8.4
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 15 YYGKYEYYSETSDVSAIFFDLDNTLIQTRKG 107
Y KY +T A FDLD TLI+T+ G
Sbjct: 57 YIAKYGKLKKTKKFIA--FDLDGTLIKTKSG 85
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 569 ARFDTEQFTGLVENVLVSFSQGKS 498
A F T+Q GLVEN +S G++
Sbjct: 10 AEFQTDQVVGLVENSFTLYSLGQN 33
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 146 NSSMVCQKKKPWRADVRFFAPSGRVLMMNPTL 241
+SS + QK+K + A V+ F P VLM+ L
Sbjct: 73 SSSKILQKQKGYLAAVQSFKPDTDVLMLTTNL 104
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 271 NSLPKNYKHIAKNISLEWVKLR---FQCLRLTNDVIHLLVTLREDYLLGVITNGPSRAQ 438
N KN++H+ K++SL L +R D I+++ TLRE + V NG + Q
Sbjct: 67 NDKGKNWRHVFKSLSLLEYCLHNGSENVVRWAKDNIYIITTLRE--FVYVDDNGHDQGQ 123
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 173 KPWRADVRFFAPSGRVLMMNPTL*MNGQRV 262
KPW ++V F+PS NPT+ + Q V
Sbjct: 123 KPWISEVNSFSPSPIGATENPTIPNSEQTV 152
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 8.4
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 130 LVEILQQQYGLSKEEAVESGCSFLRAFRACPDDESYALDEWPARLWRNSLPKNYK---HI 300
LVE + K A CS + +F DD+ YAL A+L S P N+K H+
Sbjct: 77 LVESVTSASNYPKVNAFSLMCSGIPSFIWVEDDKQYALWACLAQLDSYSYP-NHKLEIHV 135
Query: 301 AKNI 312
K+I
Sbjct: 136 YKHI 139
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Frame = -3
Query: 135 HKLIASI*YPLFLFVLMCYLN--------RKI*PKHHSFH 40
HK I +P+F++ + C++N K+ P+ H FH
Sbjct: 318 HKSINHKRFPMFIYAIGCFINFILRVTWSMKLHPRLHQFH 357
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 274 SLPKNYKHIAKNISLE 321
SLPKNY ++AK+ S E
Sbjct: 344 SLPKNYAYVAKSTSPE 359
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 103 KGILNACNKLVEILQQQYGLSKEEAVESGCSFLRAFRACPDDESYALDEW 252
KG A + +E+L++ K E VES ++A R C + Y +++
Sbjct: 129 KGYEMALSHTMEVLEEICA-DKIETVESEKELIKAIRTCISSKQYGNEDF 177
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 151 AVVRSPQAYCKHLVSPFLVCINVLS 77
AV A +++SPF+ C+N LS
Sbjct: 116 AVYYDKYARSPYIMSPFVACVNTLS 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,761
Number of Sequences: 5004
Number of extensions: 51782
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -