Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C13
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1444 + 27135119-27135196,27135437-27135506,27135599-271357...    30   1.6  
08_02_0079 + 12005624-12005921,12006144-12006550,12007250-12007840     29   2.1  
01_06_0736 - 31585840-31586459,31586545-31587070,31588051-315881...    29   3.7  
08_02_0467 - 17503754-17504037,17504183-17504354                       28   4.9  
09_06_0301 - 22135076-22135333,22136298-22136304,22136751-221369...    28   6.5  
12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634     27   8.6  
11_02_0007 + 7283080-7283918,7284526-7285764,7286317-7286376,728...    27   8.6  
09_04_0348 - 16890842-16890925,16890942-16891019,16891079-168912...    27   8.6  

>08_02_1444 +
           27135119-27135196,27135437-27135506,27135599-27135758,
           27136005-27136086,27136335-27136551,27136729-27136793,
           27137039-27137293
          Length = 308

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 510 GEADQHIFHEACKLLSVEPRNCIMVGDKL 596
           G+ D+ I+  A  L  V P  CI VGD L
Sbjct: 220 GKPDKVIYTSAMSLAGVNPHECITVGDSL 248


>08_02_0079 + 12005624-12005921,12006144-12006550,12007250-12007840
          Length = 431

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +2

Query: 137 RSYNSSMVC-QKKKPW---RADVRFFAPSGRVLMMNPTL*MNGQR 259
           R+Y++  +C ++KK W   R  ++ F P  +VLM N  + + G R
Sbjct: 159 RAYHNVRICKERKKRWHDKRIKIKKFKPGDKVLMFNSRVKLFGHR 203


>01_06_0736 -
           31585840-31586459,31586545-31587070,31588051-31588149,
           31589344-31589427,31589458-31589775,31589907-31590113
          Length = 617

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +1

Query: 118 ACNKLVEILQQQYGLSKEEAVESGCSFLRAFRACPDDESYALDEWPARLWRNSLPKNYKH 297
           ACN L EI QQ   LS +  VE+  S     +A P+D +  +        + S+P  Y+ 
Sbjct: 519 ACNPLNEIQQQMVRLSADSPVENKRSARSRTKANPNDINSNIYLVQNTTVQGSIPNAYQA 578

Query: 298 IAK 306
           +++
Sbjct: 579 VSQ 581


>08_02_0467 - 17503754-17504037,17504183-17504354
          Length = 151

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 442 QKIERLDLRQYFDCVLVSGDLP--WEKLTSTFSTRPVNCSVSNRAIASW 582
           QK+E+++  + F   +VSG+L   ++    TFS  PV      + +A W
Sbjct: 68  QKVEKVETGRSFGYEVVSGELKEVYDPYHVTFSFAPVPGKEGEQCVAGW 116


>09_06_0301 -
           22135076-22135333,22136298-22136304,22136751-22136947,
           22137089-22137471,22137624-22138029
          Length = 416

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 527 HFPRGL*TAQCRTAQLHHG 583
           H+ +G+ T +C+TA L+HG
Sbjct: 260 HYKKGVFTGRCKTAPLNHG 278


>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
          Length = 846

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 554 EQFTGLVENVLVSFSQGKSPETSTQSK 474
           E F+G+   +  +FS  KSP TST+ K
Sbjct: 84  EGFSGVTRLLATAFSTPKSPPTSTEQK 110


>11_02_0007 +
           7283080-7283918,7284526-7285764,7286317-7286376,
           7287469-7287610
          Length = 759

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
 Frame = +1

Query: 97  QEKGILNACNKLVEILQQQYGLSKEEAVESGCSFLRAFRACPDDESYAL---DEWPARLW 267
           Q+  I N   +L+  +    G S    + S    +   RAC D+E Y +   D W    W
Sbjct: 235 QKPNINNLLRELLSRIWDGSGSSGATELYSDKQLIDKLRACLDNERYLVVIDDIWQRSAW 294

Query: 268 RN---SLPKNYKHIAKNISLEWVK 330
                +LPKN  H ++ I    +K
Sbjct: 295 ETIHCALPKN-NHASRIIITTRIK 317


>09_04_0348 -
           16890842-16890925,16890942-16891019,16891079-16891266,
           16891414-16891537
          Length = 157

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 130 LVEILQQQYGLSKEEAVESGCSFLRAF-RACPDDESYALDEWPAR 261
           LVE  ++Q   +K   ++ GCS++ ++   C   E+  + E+ AR
Sbjct: 72  LVEPAREQLNQNKRSCMQDGCSYMGSYGELCKHMEATFIPEFTAR 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,225,306
Number of Sequences: 37544
Number of extensions: 333670
Number of successful extensions: 890
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)