Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C12
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   5.7  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    25   7.5  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   9.9  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   9.9  

>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 10  KTCIDTALHGIAQLILNEWG 69
           +TC+D  ++ + Q+I  +WG
Sbjct: 434 RTCLDEIINNMDQIICGQWG 453


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 93  SGDRWKQWCWNH 128
           SG+    WCWNH
Sbjct: 573 SGEGTADWCWNH 584


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 409 GQLEARVQLFPPPQTVTHEGLATNYT 486
           G     + + P PQT++HE +   YT
Sbjct: 100 GNFSENLGVQPNPQTISHESVNEEYT 125


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/55 (20%), Positives = 24/55 (43%)
 Frame = +1

Query: 223 LQLAMPLYQKIVDLTNNAPSNVGCISRGSIYCPDQLSVPGIIVTMNRLCEQQFQE 387
           L + +    K+ +  +  P+ +         C DQ+ + G I  +  +C + +QE
Sbjct: 449 LYIKLRKLDKLTEYVSGCPTEISLPILRKYKCLDQMELLGTIRKLPNVCMEVYQE 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,421
Number of Sequences: 5004
Number of extensions: 52565
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)