Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_C12
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1104 + 24339463-24340314,24340472-24340786 32 0.35
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 31 0.82
01_05_0214 - 19362812-19363477 30 1.4
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944... 29 1.9
06_03_1237 + 28602250-28604196 29 1.9
08_01_0680 - 5958066-5960253,5960707-5961503 29 3.3
08_02_1112 - 24382294-24382854 28 4.4
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377... 28 5.8
07_01_0060 - 445619-445739,446026-446182,446274-446365,446516-44... 27 7.6
>08_02_1104 + 24339463-24340314,24340472-24340786
Length = 388
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 88 IIVVTDGSSGVGTIGRNRIIQALPLPPPYPARISILP 198
+I V DG +G T+ ++L +PPP P + +LP
Sbjct: 103 LICVLDGGTGAVTVANPATRESLSVPPPPPRQAGLLP 139
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 30.7 bits (66), Expect = 0.82
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 136 NRIIQALPLPPPYPARISILPVVSPHDPCLQ 228
+++ + LPLPPP P+ + LP P P +Q
Sbjct: 341 DKVTRILPLPPPQPSHLPPLPPRPPTMPSMQ 371
>01_05_0214 - 19362812-19363477
Length = 221
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +1
Query: 82 VQIIVVTDGSSGVGTIGRNRIIQALPLPPPY-PARISILPVVSPHDPCLQLAMPLYQKIV 258
V+ V + + + +G LPL PPY PA+ S P P P L PL
Sbjct: 7 VRYYVPCEEADDIHDLGEEEQFCPLPLSPPYSPAQPSPPPTSPPASPTLLPTSPLSDDHA 66
Query: 259 DLTNNA 276
D T ++
Sbjct: 67 DHTTDS 72
>11_06_0543 +
24792110-24792229,24792316-24792521,24793770-24794462,
24794538-24794717,24794793-24795084,24795166-24795375
Length = 566
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = +1
Query: 1 ARGKTCIDTALHGIAQLILNEWGYQTPVQIIVVTDGSSGVGTIGRNRIIQALPLPPPYPA 180
ARG T + + L+ I +L + G + + T G++ +G I ++ I +P PPP P
Sbjct: 62 ARGPTRMPSGLYTIMELAAD--GTPIAPESALTTYGNA-IGVIVKDGIPIKMPTPPPLPH 118
Query: 181 RISILPVVSPHDPCLQLA 234
+ P+ P Q A
Sbjct: 119 KSPSPPLAQRKSPSPQEA 136
>06_03_1237 + 28602250-28604196
Length = 648
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 139 RIIQALPLPP--PYPARISILPVVSPHDPCLQLAM 237
R + ALP PP P P +++ VSP DP L A+
Sbjct: 75 RRLAALPPPPHAPLPYALNVFSAVSPPDPFLAAAL 109
>08_01_0680 - 5958066-5960253,5960707-5961503
Length = 994
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 383 WNCCSHRRFIVTIIPGTD 330
W CC+HRRFI + P +D
Sbjct: 308 WVCCNHRRFIYRMEPLSD 325
>08_02_1112 - 24382294-24382854
Length = 186
Score = 28.3 bits (60), Expect = 4.4
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Frame = +1
Query: 79 PVQIIVVTDGSSGVGTIGRNRIIQALPLPPPYPARISILPVVSPHDPCLQLAMPLYQKIV 258
P Q + V S+ V R + A LP P+ R ++S H Q+A+P + V
Sbjct: 70 PNQKMDVVFRSAAVELFFGGRRMAAQALPAPFVQRRGQSQIISVHMVSSQVALP-PELAV 128
Query: 259 DLTNNAPSN-VGCISRGSIYCPDQLSVPGIIVTMNRLCEQQFQEFWCALKCGQLEAR 426
+ N SN V RG+ +L +M+ LC+ + A CG L AR
Sbjct: 129 AMVNQVRSNRVVYTIRGTFKVQAKLWFWHYTYSMSALCDLEL----TAPPCGVLVAR 181
>11_01_0489 +
3776563-3776692,3776995-3777073,3777532-3777840,
3778828-3778898,3778975-3779213,3779306-3779383,
3779734-3780156,3780416-3780661,3780886-3780978,
3781480-3781527
Length = 571
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +1
Query: 157 PLPPPYPARISILPVVSPHDPCLQLAMPLYQKIVDLTNNAPSNVGCISRGSI-YCPDQLS 333
P PP PA + LP+ PH P + + QK + A + + D S
Sbjct: 422 PRPPAMPAGMQQLPLTHPHVPQVPAIPDIAQKEMRFPEQANRSTEFAHHPKLRKLEDGTS 481
Query: 334 VPGII 348
PGI+
Sbjct: 482 TPGIV 486
>07_01_0060 -
445619-445739,446026-446182,446274-446365,446516-446580,
447052-447117,447707-447838,448125-448298,449025-449183,
449297-449384,449492-449573,449757-449874,449959-450162
Length = 485
Score = 27.5 bits (58), Expect = 7.6
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Frame = +1
Query: 40 IAQLILNEWGYQTPVQIIVVTDGSS-GV----GTIGRNR---IIQALPLPPPYPARISI 192
+A+ I GY + ++I +TDG+S GV TI RN I+ +P P Y A IS+
Sbjct: 123 VAEFIERRDGYPSDPELIYLTDGASKGVMQMLNTIIRNERDGILVPVPQYPLYSAAISL 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,064,405
Number of Sequences: 37544
Number of extensions: 366308
Number of successful extensions: 1127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -