Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C12
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80223-1|CAB02319.1|  640|Caenorhabditis elegans Hypothetical pr...    31   0.56 
M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein ( C.ele...    31   0.56 
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    30   0.97 
Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF101319-6|AAC69351.1|  314|Caenorhabditis elegans Hypothetical ...    27   6.9  
AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z80223-1|CAB02319.1|  640|Caenorhabditis elegans Hypothetical
           protein F26D10.3 protein.
          Length = 640

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 13  TCIDTALHGIAQLILNEWGYQTPVQIIVVTDGSSGVGTIGRNRI 144
           +C+   +HG  ++I N+ G +T    +  TD    +G   +N++
Sbjct: 16  SCVGVFMHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59


>M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 70A gene, complete cds. ).
          Length = 640

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 13  TCIDTALHGIAQLILNEWGYQTPVQIIVVTDGSSGVGTIGRNRI 144
           +C+   +HG  ++I N+ G +T    +  TD    +G   +N++
Sbjct: 16  SCVGVFMHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
 Frame = +1

Query: 112 SGVGTIGRNRIIQALPLPPPYPARI---SILPVVSPHD-PCLQL--AMPLYQKIVDLTNN 273
           S V  + RN+   A P PPP P +I   SI+PVV P   P + +  + P YQ+   LTN+
Sbjct: 527 SNVTRVPRNQNA-APPPPPPPPTQIGNQSIIPVVDPSRLPLVDMTSSYPSYQQQQTLTNS 585


>Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical
           protein F25H8.5c protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +1

Query: 133 RNRIIQALPLPPPYPARISILPVVSPHDPCLQLAMP 240
           RNR  Q  P PPP   R + LP   P  PC Q   P
Sbjct: 84  RNRRPQPTPGPPP--PRNNCLPPPGPPPPCQQYQQP 117


>Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical
           protein F25H8.5b protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +1

Query: 133 RNRIIQALPLPPPYPARISILPVVSPHDPCLQLAMP 240
           RNR  Q  P PPP   R + LP   P  PC Q   P
Sbjct: 84  RNRRPQPTPGPPP--PRNNCLPPPGPPPPCQQYQQP 117


>Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical
           protein F25H8.5a protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +1

Query: 133 RNRIIQALPLPPPYPARISILPVVSPHDPCLQLAMP 240
           RNR  Q  P PPP   R + LP   P  PC Q   P
Sbjct: 84  RNRRPQPTPGPPP--PRNNCLPPPGPPPPCQQYQQP 117


>U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical
           protein C06G3.9 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 150 LNYTISAYGSNTTASICHHYNLHRCLISPFI*YKLSNT 37
           L   +   G+ TTA++C H+NL   L+   +  KL ++
Sbjct: 126 LRTLLDEQGNQTTAALCKHWNLSSELLQSLLIEKLGSS 163


>AF101319-6|AAC69351.1|  314|Caenorhabditis elegans Hypothetical
           protein K08D9.1 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 404 LSAHQNSWNCCSHRRFIVTIIP 339
           ++ ++++W   SH RF+VT+IP
Sbjct: 200 MTFNKDAWIAASHMRFMVTLIP 221


>AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical
           protein R05G9R.1 protein.
          Length = 789

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 196 PVVSPHDPCLQLAMPLYQKIVDLTNN 273
           P  +P+D C    +PLY+ I + +NN
Sbjct: 667 PYPTPYDKCSSQLLPLYKLIDEASNN 692


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,217,586
Number of Sequences: 27780
Number of extensions: 312233
Number of successful extensions: 746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)