Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C11
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   163   2e-41
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    27   2.4  
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    27   2.4  
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    27   2.4  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    27   2.4  
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    27   2.4  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   2.4  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    27   2.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.3  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   7.3  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   9.7  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   9.7  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   9.7  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  163 bits (396), Expect = 2e-41
 Identities = 79/177 (44%), Positives = 105/177 (59%)
 Frame = +3

Query: 18  RXLSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 197
           + L IPTKI++GTIEI +DVH++    KVG SEATLLNMLNISPF+YG+ V  +YD G +
Sbjct: 137 QALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNV 196

Query: 198 FAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVD 377
           F+P ILD+  EDL    L+  + + A+SL   YPT+ S  HS+ N +KNL+A++  TE  
Sbjct: 197 FSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYT 256

Query: 378 FKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLF 548
           F+     K ++ DPS FV                            ESD+DMGFGLF
Sbjct: 257 FEGTEQTKAFLADPSAFV--VAAAPAAAAGGEAEAPAAEAAAEEEEESDEDMGFGLF 311


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 516 ESDDDMGFGLF 548
           ESD+DMGFGLF
Sbjct: 99  ESDEDMGFGLF 109


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 516 ESDDDMGFGLF 548
           ESD+DMGFGLF
Sbjct: 99  ESDEDMGFGLF 109


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 516 ESDDDMGFGLF 548
           ESD+DMGFGLF
Sbjct: 98  ESDEDMGFGLF 108


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 516 ESDDDMGFGLF 548
           ESD+DMGFGLF
Sbjct: 99  ESDEDMGFGLF 109


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 516 ESDDDMGFGLF 548
           ESD+DMGFGLF
Sbjct: 98  ESDEDMGFGLF 108


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 178 TCLTTRPYEKGEMFNMLRRVASEAP 104
           + LT  PYEKGE  N +R   S  P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 516 ESDDDMGFGLF 548
           ESD+DMGFGLF
Sbjct: 99  ESDEDMGFGLF 109


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 246 FLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIA 359
           +L GV   +A    +  PT  S PH +  GF   + IA
Sbjct: 524 YLVGVPLQSATICVVSLPTEDSQPHVLHEGFLGEVCIA 561


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 182 VHLFDNKTIRKGRDVQHVEK 123
           V L D   +RKG DVQ +EK
Sbjct: 289 VLLSDTAGLRKGEDVQEIEK 308


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/61 (22%), Positives = 32/61 (52%)
 Frame = +3

Query: 135 LNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASA 314
           L+I  F+ G+ +  +  +G++ +P      P  +   F+A  A+ +++S    YP ++ +
Sbjct: 186 LDIREFNTGMHIINLLLNGSLKSP------PVSISPSFIASAASTSSVSAPSQYPGLSRS 239

Query: 315 P 317
           P
Sbjct: 240 P 240


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 4/24 (16%)
 Frame = +3

Query: 372 VDFKEATT----IKEYIKDPSKFV 431
           VD +EA T    +KEYI+DP+K +
Sbjct: 427 VDGREAVTFLRLVKEYIEDPAKML 450


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 182 VHLFDNKTIRKGRDVQHVEKSSFRSS 105
           VH  D  T+R G  +     SSFR S
Sbjct: 62  VHCLDIPTVRPGSSMSRTSASSFRYS 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,566
Number of Sequences: 5004
Number of extensions: 31359
Number of successful extensions: 109
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)