Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_C11
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 186 1e-47
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 185 2e-47
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 185 2e-47
03_02_0966 + 12783515-12783901 30 1.1
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 30 1.4
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 29 2.4
02_03_0041 + 14275897-14276370 29 2.4
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808... 29 3.2
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857... 29 3.2
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 3.2
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 28 4.3
04_04_0095 - 22775340-22776017 28 4.3
04_01_0142 + 1640472-1640611,1641618-1641744,1642233-1642425,164... 28 5.6
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 28 5.6
06_03_1442 - 30172595-30172606,30172607-30172684,30173034-301734... 27 7.5
06_03_1439 - 30157110-30157121,30157122-30157199,30157549-301579... 27 7.5
06_03_1427 - 30090464-30090475,30090476-30090553,30090903-300913... 27 7.5
06_03_1422 + 30058936-30058975,30059057-30059233,30060848-300610... 27 7.5
03_01_0610 + 4478521-4478715,4480003-4480090,4480255-4480321,448... 27 7.5
06_01_1023 - 7996240-7996369,7997166-7997260,7997430-7997515,799... 27 9.9
03_05_0291 - 22837412-22838128 27 9.9
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 186 bits (452), Expect = 1e-47
Identities = 87/175 (49%), Positives = 114/175 (65%)
Frame = +3
Query: 24 LSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFA 203
L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++F+
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFS 203
Query: 204 PAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFK 383
P +LD+ +DL EKF +GV+ VA++SL+I YPT+A+APH NG+KN+LA+A TE +
Sbjct: 204 PEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYP 263
Query: 384 EATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLF 548
A IKEY+KDPSKF ESD D+G LF
Sbjct: 264 HADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLF 318
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 185 bits (451), Expect = 2e-47
Identities = 89/176 (50%), Positives = 115/176 (65%), Gaps = 1/176 (0%)
Frame = +3
Query: 24 LSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFA 203
L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++F+
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFS 203
Query: 204 PAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFK 383
P +LD+ EDL EKF +GV+ VA++SL+I YPT+A+APH NG+KN+LA+A TE +
Sbjct: 204 PEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYP 263
Query: 384 EATTIKEYIKDPSKF-VXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLF 548
A IKEY+KDPSKF V ESD D+G LF
Sbjct: 264 HADKIKEYLKDPSKFAVAAAVAAADSGAAAPAASKEEEKKEEPEEESDGDLGMSLF 319
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 185 bits (450), Expect = 2e-47
Identities = 89/176 (50%), Positives = 115/176 (65%), Gaps = 1/176 (0%)
Frame = +3
Query: 24 LSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFA 203
L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++F+
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFS 203
Query: 204 PAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFK 383
P +LD+ EDL EKF +GV+ VA++SL+I YPT+A+APH NG+KN+LA+A TE +
Sbjct: 204 PEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYP 263
Query: 384 EATTIKEYIKDPSKF-VXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLF 548
A IKEY+KDPSKF V ESD D+G LF
Sbjct: 264 HADKIKEYLKDPSKFAVAAPVAAADSGAAAVASSKEEEKKEEPEEESDGDLGMSLF 319
>03_02_0966 + 12783515-12783901
Length = 128
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 252 AGVANVAALSLSIGYPTVASAPHSIANGFKN-LLAIAA 362
AG+A VAA++ ++ P VA A +++ KN LL+IA+
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFLLSIAS 104
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +3
Query: 225 PEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATTIKE 404
PE R F AG A V A +P A+A +S GF+ +A +V F E T +
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFRGGVATRSVA---FDEMTPRRA 91
Query: 405 YIKDPS 422
+ P+
Sbjct: 92 SVDVPN 97
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +3
Query: 87 KPGDKVGASEATLLNMLNISPFS--YGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGV 260
KP D V +S TLL N + FS Y L +++ + A A D +++ EK G+
Sbjct: 423 KPSDVVASSYVTLLQAANYATFSLDYALELEERLRARERDAAAEADAMRKEVEEKAQRGL 482
Query: 261 ANVAALSL 284
A A ++
Sbjct: 483 AAAKAAAV 490
>02_03_0041 + 14275897-14276370
Length = 157
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 313 ADATVGYPMDNESAATLATPARNFSRRSSGLMSRIAGAKMVPE 185
A+ G P+ E AT A RR+SG + +AG +PE
Sbjct: 88 AEEEDGVPVPGEVVATTADAQETRQRRNSGSNATVAGEDALPE 130
>03_02_0394 -
8081172-8081330,8082015-8082134,8082223-8082271,
8083193-8083371,8083583-8083852,8084480-8084631,
8085694-8085715,8086314-8086430
Length = 355
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = +3
Query: 195 IFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEV 374
+F I + K + K LA V N + ++ IGYP S + + T+
Sbjct: 237 VFKELIFEPKEYKIFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPNKVWTDE 296
Query: 375 DFKEATTIKEYIKDP 419
D E + YI+ P
Sbjct: 297 DGVEHVEVNFYIRGP 311
>01_06_1676 -
39084928-39085016,39085462-39085555,39085664-39085750,
39085941-39086073,39086451-39086724,39086863-39086989,
39087095-39087345,39087476-39087575
Length = 384
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +3
Query: 153 SYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAAL 278
SYG V V DSGT A LD + +FL VA V+ L
Sbjct: 83 SYGRVYYAVLDSGTKIAVKKLDSNENEPTSEFLTQVALVSRL 124
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +3
Query: 60 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAI 212
E++ +++P D VG S +++ +++ P+S VV+ +Y+S + A I
Sbjct: 346 EMLPSGFLIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKI 395
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 257 SSKELLAKVLRLDVENCRREDGTGVVHLFDNKTIRK 150
+ K LL K++RLDV+N R+ L+ N +I K
Sbjct: 408 NKKSLLGKIMRLDVDNPPRQSEIANQSLWGNYSIPK 443
>04_04_0095 - 22775340-22776017
Length = 225
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 176 GVRLRYHLRAGNSRHQAGGPSREVPCWSG 262
G+ +RY++ AG+ + + +REVPC G
Sbjct: 37 GLFVRYYVPAGDGKRRIRVDTREVPCGGG 65
>04_01_0142 +
1640472-1640611,1641618-1641744,1642233-1642425,
1642793-1643349
Length = 338
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 218 HQAGGPSREVPCWSGQRGRALVVHRVPDGR 307
H AG P W G+R RA H +P GR
Sbjct: 13 HLAGQPPLLTAGWGGRRERARRSHAMPTGR 42
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 262 PTWPRSRCPSGTRRSRL 312
PT PRSR PS +RR R+
Sbjct: 149 PTTPRSRAPSSSRRRRM 165
>06_03_1442 -
30172595-30172606,30172607-30172684,30173034-30173435,
30173503-30173577,30173667-30173822,30173952-30174143,
30174202-30174208,30175866-30175918
Length = 324
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/90 (22%), Positives = 44/90 (48%)
Frame = +3
Query: 60 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLR 239
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A I +
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 167
Query: 240 EKFLAGVANVAALSLSIGYPTVASAPHSIA 329
+ L VA S+ G+ +A H+++
Sbjct: 168 LRCLRQVAYKDTRSVITGWGRKLAALHALS 197
>06_03_1439 -
30157110-30157121,30157122-30157199,30157549-30157950,
30158018-30158092,30158182-30158337,30158467-30158658,
30158717-30158723,30160381-30160433
Length = 324
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/90 (22%), Positives = 44/90 (48%)
Frame = +3
Query: 60 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLR 239
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A I +
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 167
Query: 240 EKFLAGVANVAALSLSIGYPTVASAPHSIA 329
+ L VA S+ G+ +A H+++
Sbjct: 168 LRCLRQVAYKDTRSVITGWGRKLAALHALS 197
>06_03_1427 -
30090464-30090475,30090476-30090553,30090903-30091304,
30091372-30091446,30091536-30091691,30091821-30092012,
30093735-30093908,30094966-30095123,30096738-30096914,
30096996-30097035
Length = 487
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/90 (22%), Positives = 44/90 (48%)
Frame = +3
Query: 60 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLR 239
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A I +
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 330
Query: 240 EKFLAGVANVAALSLSIGYPTVASAPHSIA 329
+ L VA S+ G+ +A H+++
Sbjct: 331 LRCLRQVAYKDTRSVITGWGRKLAALHALS 360
>06_03_1422 +
30058936-30058975,30059057-30059233,30060848-30061005,
30062063-30062236,30063959-30064150,30064280-30064435,
30064525-30064599,30064667-30065068,30065418-30065495,
30065840-30066173,30066275-30066339
Length = 616
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/90 (22%), Positives = 44/90 (48%)
Frame = +3
Query: 60 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLR 239
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A I +
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 330
Query: 240 EKFLAGVANVAALSLSIGYPTVASAPHSIA 329
+ L VA S+ G+ +A H+++
Sbjct: 331 LRCLRQVAYKDTRSVITGWGRKLAALHALS 360
>03_01_0610 +
4478521-4478715,4480003-4480090,4480255-4480321,
4480561-4480679,4480809-4480904,4481019-4481074,
4481400-4481485,4481914-4482048,4482216-4482300
Length = 308
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +3
Query: 159 GLVVKQVYDSGTIFAPAILDI--KPEDLREKFLAG-VANVAALSLSIGYPTVASAPHSIA 329
G ++V+D + L++ P KFLA + + + YP A A H I
Sbjct: 130 GAGTERVFDEVIQYNDGSLEVAFSPSKAMGKFLASELPRTTETTCKVLYPASAKAGHEIQ 189
Query: 330 NGFKN 344
NG N
Sbjct: 190 NGLSN 194
>06_01_1023 -
7996240-7996369,7997166-7997260,7997430-7997515,
7998034-7998184
Length = 153
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +2
Query: 197 LRAGNSRHQAGGPSREVPCWSGQRGRAL----VVHRVPDGRVCA 316
+ AG R + GG P W G R RA+ + VP GR A
Sbjct: 7 VEAGRRRRRGGGSDPPSPMWGGGRRRAVSRRGKLVAVPVGRAAA 50
>03_05_0291 - 22837412-22838128
Length = 238
Score = 27.1 bits (57), Expect = 9.9
Identities = 23/65 (35%), Positives = 28/65 (43%)
Frame = -2
Query: 283 NESAATLATPARNFSRRSSGLMSRIAGAKMVPESYTCLTTRPYEKGEMFNMLRRVASEAP 104
+E AAT A+PA + S SG S G V E C T P G+ +R E P
Sbjct: 126 DEPAATTASPAASSSNSGSG--SGGGGGNKVHECSVCKKTFP--TGQALGGHKRCHYEGP 181
Query: 103 TLSPG 89
S G
Sbjct: 182 IGSGG 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,595,140
Number of Sequences: 37544
Number of extensions: 239826
Number of successful extensions: 759
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -