Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C11
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   212   1e-55
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    29   2.9  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    28   3.9  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    28   3.9  
AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    28   3.9  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  212 bits (518), Expect = 1e-55
 Identities = 99/177 (55%), Positives = 128/177 (72%)
 Frame = +3

Query: 18  RXLSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 197
           + L IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+QVYD GT+
Sbjct: 139 QALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTL 198

Query: 198 FAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVD 377
           + P +LD+  E+LR++FL+GV NVA++SL++ YPT+AS  HS+ANG +N+L +AAVT+V 
Sbjct: 199 YTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVS 258

Query: 378 FKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLF 548
           FKEA TIK +I DPSKF                             ESDDDMGFGLF
Sbjct: 259 FKEAETIKAFIADPSKF----AAAAPAAAAAPAAAAPAAKKEEPKEESDDDMGFGLF 311


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 200 EDGTGVVHLFDNKTIRKGRDVQ-HVEKSSFRSSHLITRLQDM 78
           ED  GVV +F+N+    GR V+ +   + +  SHL  R++++
Sbjct: 791 EDQKGVVQIFNNQCTSSGRKVKLNQNVADYCGSHLEARVEEI 832


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 200 EDGTGVVHLFDNKTIRKGRDVQ-HVEKSSFRSSHLITRLQDM 78
           ED  GVV +F+N+    GR V+ +   + +  SHL  R++++
Sbjct: 804 EDQKGVVQIFNNQCTSSGRKVKLNQNVADYCGSHLEARVEEI 845


>Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 105 GASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSL 284
           G S+ +L   L+     +G  V ++ D G++ A  + + +    R   LAG A     SL
Sbjct: 570 GRSDESLNRFLSRGMIVWGPEVTKILDEGSLLAATVKNPENSGFRTVVLAGAAKTGKTSL 629

Query: 285 S 287
           +
Sbjct: 630 A 630


>Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 105 GASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSL 284
           G S+ +L   L+     +G  V ++ D G++ A  + + +    R   LAG A     SL
Sbjct: 570 GRSDESLNRFLSRGMIVWGPEVTKILDEGSLLAATVKNPENSGFRTVVLAGAAKTGKTSL 629

Query: 285 S 287
           +
Sbjct: 630 A 630


>Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical
           protein H15N14.2b protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 105 GASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSL 284
           G S+ +L   L+     +G  V ++ D G++ A  + + +    R   LAG A     SL
Sbjct: 504 GRSDESLNRFLSRGMIVWGPEVTKILDEGSLLAATVKNPENSGFRTVVLAGAAKTGKTSL 563

Query: 285 S 287
           +
Sbjct: 564 A 564


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 516 ESDDDMGFGLF 548
           ESDDDMGFGLF
Sbjct: 96  ESDDDMGFGLF 106


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 516 ESDDDMGFGLF 548
           ESDDDMGFGLF
Sbjct: 100 ESDDDMGFGLF 110


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 516 ESDDDMGFGLF 548
           ESDDDMGFGLF
Sbjct: 99  ESDDDMGFGLF 109


>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 516 ESDDDMGFGLF 548
           ESDDDMGFGLF
Sbjct: 100 ESDDDMGFGLF 110


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
           protein ZK593.5 protein.
          Length = 1326

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 286 DNESAATLATPARNFSRRSSGLMSRIAGAKMVPES 182
           D    + L  PA +  R+ S +MSR AG+K  P S
Sbjct: 72  DASKRSGLKAPAASAIRKDSSVMSRSAGSKASPGS 106


>Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical
           protein ZK822.5a protein.
          Length = 577

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +3

Query: 24  LSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIF- 200
           LSI   +S G    I    IL+ GD+  A E  L+    + P    L +   + SG +  
Sbjct: 17  LSIGLSLSTGVYHAIKSRIILRRGDRT-AKEEYLMGGRQLPPLPVALSLLTTFLSGILML 75

Query: 201 -APAILDIKPEDLREKFLAGVAN 266
             PA +  +   +   F+ GVA+
Sbjct: 76  GVPAEMFQRGAQIWLNFVIGVAS 98


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 112 EAPTLSPGFRIWTSLIISIVPFEILVG 32
           EAP L P   +W  +I+SI P    VG
Sbjct: 56  EAPGLKPMGTVWKEVIVSITPGMAAVG 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,024,636
Number of Sequences: 27780
Number of extensions: 181672
Number of successful extensions: 620
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)