Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C10
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    75   5e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    29   0.36 
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    28   0.62 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   1.1  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    25   5.8  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 74.5 bits (175), Expect = 5e-15
 Identities = 31/66 (46%), Positives = 45/66 (68%)
 Frame = +2

Query: 200 NMRRPNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEA 379
           N+ + +W + +L PF KDFY  H++V +RS  EV +YR + E+ V G+ VP P+  FEEA
Sbjct: 68  NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127

Query: 380 NFPDYV 397
            FP+YV
Sbjct: 128 GFPNYV 133


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +2

Query: 311 RNKHEVTVSGVEVPNPIEHFEEANFP 388
           +  + +++ G ++PNP+ ++EEA  P
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLP 257


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -2

Query: 400 THIIWKVCLFKMFNRIRYFNSTNSDFVFVSIVLYFIW 290
           +++I  + L ++F+ +R+ N+    ++F SIV +  W
Sbjct: 859 SNLILAIVLIQVFDGMRFINNGYMKYIFWSIVAFTAW 895


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 290 PYEVEDYRNKHEVTVSGVE-VPNPI 361
           PYE++ YRNKH   +S  + +PN +
Sbjct: 253 PYEIQVYRNKHWFPISTEDLLPNDV 277


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 230 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNP 358
           S+  +NKD  N  K    RS  ++  +  K +   S VE+  P
Sbjct: 744 SVNDYNKDETNFRKHNAKRSKTDIRSWFEKKQPIDSDVEISEP 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,372,672
Number of Sequences: 5004
Number of extensions: 22609
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)