Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_C10
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 63 9e-11
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 55 2e-08
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 54 3e-08
08_01_0397 - 3509186-3510291,3510322-3512335 39 0.001
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 38 0.002
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 36 0.016
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 35 0.021
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 32 0.15
07_03_1500 + 27001842-27002058,27002144-27002283,27002458-270025... 29 1.0
02_01_0765 - 5694535-5694644,5695039-5696550,5697229-5697390,569... 28 3.2
01_07_0192 - 41888998-41890632 27 4.2
10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495... 27 5.6
06_03_1265 + 28847782-28849803 27 5.6
07_01_1218 - 11633829-11634628,11634713-11635050,11635349-116354... 26 9.7
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 62.9 bits (146), Expect = 9e-11
Identities = 28/61 (45%), Positives = 38/61 (62%)
Frame = +2
Query: 212 PNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPD 391
P D SL PF K+FY +V S +V YR + ++TV G +VP P+ +F+EANFPD
Sbjct: 106 PKPDFRSLIPFEKNFYVECPAVQAMSDMDVSQYRRQRDITVEGHDVPKPVRYFQEANFPD 165
Query: 392 Y 394
Y
Sbjct: 166 Y 166
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 54.8 bits (126), Expect = 2e-08
Identities = 24/55 (43%), Positives = 32/55 (58%)
Frame = +2
Query: 233 LQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYV 397
L F K+FY SV + EVE YR + E+TV G +VP P+ F + FP+YV
Sbjct: 48 LPRFEKNFYVESPSVAGMTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYV 102
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 54.4 bits (125), Expect = 3e-08
Identities = 24/55 (43%), Positives = 31/55 (56%)
Frame = +2
Query: 224 SLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFP 388
++ +PFNKDFY SV S EV DY + VSG +VP PI+ F + FP
Sbjct: 173 TIEYEPFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFP 227
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +2
Query: 227 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIE 364
+ QPF K+FY K + + EV YR + E+ V G +VP PI+
Sbjct: 379 IDYQPFRKNFYIEVKDITKMAAEEVAAYRKQLELKVHGKDVPKPIK 424
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 302 EDYRNKHEVTVSGVEVPNPIEHFEEANFP 388
E YR++HE+TV G VP PI FE FP
Sbjct: 130 EAYRHRHEITVVGDNVPAPITSFETGGFP 158
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 35.5 bits (78), Expect = 0.016
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 227 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIE 364
+ QPF K+ Y K + + EV YR E+ V G +VP PI+
Sbjct: 240 IEYQPFRKNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPKPIK 285
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 35.1 bits (77), Expect = 0.021
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 302 EDYRNKHEVTVSGVEVPNPIEHFEEANFP 388
E YR KHE+T+ G E P P F+ FP
Sbjct: 160 EAYRAKHEITIVGNEAPAPFMTFQSTGFP 188
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 32.3 bits (70), Expect = 0.15
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +2
Query: 308 YRNKHEVTVSGVEVPNPIEHFEEANFP 388
YR HEVT G VP P FE FP
Sbjct: 586 YRQHHEVTAVGENVPPPFMTFEATGFP 612
>07_03_1500 +
27001842-27002058,27002144-27002283,27002458-27002549,
27002680-27002776,27002871-27002951,27003031-27003263,
27003876-27004070,27004149-27004239,27004324-27004446,
27004542-27004692,27005060-27005262
Length = 540
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 311 RNKHEVTVSGVEVPNPIEHFEE 376
R K ++ +SG VP P+E+FEE
Sbjct: 125 RKKFDIHISGQNVPAPLENFEE 146
>02_01_0765 -
5694535-5694644,5695039-5696550,5697229-5697390,
5698015-5698057
Length = 608
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 296 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPD 391
++ R+K ++ V G +VP+PI F + P+
Sbjct: 160 QIASLRSKLDICVKGEDVPDPIMCFSSSGLPE 191
>01_07_0192 - 41888998-41890632
Length = 544
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +2
Query: 335 SGVEVPNP--IEHFEEANFPDYV 397
SGV NP ++HF A+FP+YV
Sbjct: 84 SGVATANPAVVDHFLRASFPNYV 106
>10_01_0003 +
46158-46428,46588-46706,46819-46928,48977-49415,
49511-49633,49805-50106,50143-50350,50729-51448
Length = 763
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 260 NPHKSVLDRS--PYEVEDYRNKHEVTVSGVEVPNPIEHFEEAN 382
N +S+LD YE + +++E+T+S PN E +AN
Sbjct: 234 NNAESILDEGYISYEAQTPADRYEITISDNGQPNDYESLVDAN 276
>06_03_1265 + 28847782-28849803
Length = 673
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3
Query: 174 PRKISLVGKICDALIGIRCRSNHLTKIFIILINQSW 281
PR +S V K C+ L+G RS LT+ +++I++SW
Sbjct: 414 PRIVSFVAKYCNQLLGDPYRS-VLTQ--VLVIHRSW 446
>07_01_1218 -
11633829-11634628,11634713-11635050,11635349-11635445,
11635482-11635725,11636114-11636122
Length = 495
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 245 NKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIE 364
NK YN +++ R+P + E Y N ++ EV P+E
Sbjct: 137 NKHKYNELGNIIPRTPTDQEKYGNNSSYILNIEEVILPLE 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,254,939
Number of Sequences: 37544
Number of extensions: 126112
Number of successful extensions: 298
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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