Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C10
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    53   7e-08
U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical pr...    34   0.033
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    33   0.077
AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical ...    31   0.41 
Z81089-2|CAB03136.1|  259|Caenorhabditis elegans Hypothetical pr...    28   2.2  
AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    28   2.2  
AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and bel...    28   2.2  
AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and bel...    28   2.2  
AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical ...    28   2.9  
AF036693-3|AAO61431.1|  544|Caenorhabditis elegans Hypothetical ...    27   6.7  

>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 53.2 bits (122), Expect = 7e-08
 Identities = 22/65 (33%), Positives = 38/65 (58%)
 Frame = +2

Query: 203 MRRPNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEAN 382
           +R  +W + +L P  KDFY+ + +V  R  YE++ + + ++VT+ G  VP P+  F EA 
Sbjct: 77  LRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAP 136

Query: 383 FPDYV 397
            P  +
Sbjct: 137 LPGQI 141


>U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical
           protein F01F1.7 protein.
          Length = 730

 Score = 34.3 bits (75), Expect = 0.033
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 269 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYV 397
           K + + S  +   +R    +++ G  VP P+ ++EEA FPD V
Sbjct: 270 KELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEV 312


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 33.1 bits (72), Expect = 0.077
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 227 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANF 385
           +  Q FNK+FY  H+ +      +V   +N   + V G++ P P+  F   +F
Sbjct: 220 IQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSF 272


>AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical
           protein F53H1.1 protein.
          Length = 970

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 242 FNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIE 364
           F K+FY   + +   +  EV+ YR + + +TV G++ P PI+
Sbjct: 263 FKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIK 304


>Z81089-2|CAB03136.1|  259|Caenorhabditis elegans Hypothetical
           protein F53H4.3 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 236 QPFNKDFYNPHKSVLDRSPYE-VEDYRNKHEVTVSGVEVPNPIEHFEEANFP 388
           QP N+D Y  +  +L+   Y+   D  N+++    G +VPNP     E   P
Sbjct: 200 QPNNRDTYL-NNLLLEIEEYDDFLDQVNQYKTRYPGAQVPNPYRSLPEGKLP 250


>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +2

Query: 326 VTVSGVEVPNPIEHFEEANF 385
           V VSG  VP  IEHF EA F
Sbjct: 127 VEVSGDSVPAAIEHFNEAGF 146


>AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform b protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +2

Query: 326 VTVSGVEVPNPIEHFEEANF 385
           V VSG  VP  IEHF EA F
Sbjct: 111 VEVSGDSVPAAIEHFNEAGF 130


>AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform a protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +2

Query: 326 VTVSGVEVPNPIEHFEEANF 385
           V VSG  VP  IEHF EA F
Sbjct: 108 VEVSGDSVPAAIEHFNEAGF 127


>AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical
           protein Y57A10A.4 protein.
          Length = 629

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 263 PHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEH-FEEANFPDY 394
           PH  +L+  P+E +D   K+   V G   P PIE  F++ N  D+
Sbjct: 416 PHVPILN-PPFESDDEEVKYIGAVKGQPKPGPIESVFDQINNRDH 459


>AF036693-3|AAO61431.1|  544|Caenorhabditis elegans Hypothetical
           protein C49A9.8 protein.
          Length = 544

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 306 TIETNTKSLLVELKYLILLNILKR 377
           T++TN KSL ++ K+  +LNI K+
Sbjct: 291 TVKTNEKSLKIDKKWDAILNIRKK 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,396,981
Number of Sequences: 27780
Number of extensions: 119125
Number of successful extensions: 402
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)