Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_C09
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 31 0.12
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 31 0.15
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.35
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 29 0.47
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 0.82
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.1
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 27 1.9
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 27 1.9
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 1.9
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 26 3.3
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 26 3.3
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 4.4
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 4.4
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ... 26 4.4
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 5.8
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 5.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.6
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 7.6
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 7.6
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 7.6
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 31.1 bits (67), Expect = 0.12
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +1
Query: 43 DSPLTDTSLTAQKMEKWVEAQRKGEKIDIDVYGKPTEKQLRELEHVRNLSKELQDNLHEL 222
D L +T++ Q++ K +E R D++ E+ + +++KE ++EL
Sbjct: 491 DKALAETNIRLQEVTKELETLRMKNSNDLNEIHDLREENEGLTLKIDSITKEKDRLINEL 550
Query: 223 ENSVRLAEVENQEMNPT 273
E ++ EV E+N T
Sbjct: 551 EQRIKSYEVNVSELNGT 567
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 30.7 bits (66), Expect = 0.15
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +1
Query: 67 LTAQKMEKWVEAQRKGEKIDIDVYGKPTEKQLRELEHVRNLSKELQDNLHELENSVRLAE 246
LT QK A +K + +D KPT + R E NL + D + L +RLA
Sbjct: 143 LTEQKQLDPTLAAKKELDLQMDAVLKPTRTKKRSNED--NLEQMADDEVLRLREQMRLAA 200
Query: 247 VENQEMN 267
+ + E+N
Sbjct: 201 LRDAELN 207
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 29.5 bits (63), Expect = 0.35
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Frame = +1
Query: 37 LEDSPLTDTSLTA-QKMEKWVEAQRKGEKIDIDVYGKPTEKQLRELEHVRNLSKELQDNL 213
+ D PL D+ + + EK + A K EK D D+Y + ++ + +LE S +N
Sbjct: 231 IADKPLKDSMFNSNSEKEKIMHALEKAEK-DADIYSEFIQQYMEQLESSLEKSSTAIENA 289
Query: 214 HE--LENSVRLAEVENQEMNPTAPMLDYSEDHE 306
E + LAE + + + + D+E
Sbjct: 290 QNRLAEMTAHLAESSDYDNDDDTDGIINETDYE 322
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.47
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Frame = +1
Query: 10 NGNGKMNHSLEDSPLTDTSLTAQKMEKWVEAQRKGEKIDIDVYG-KPTEKQLRELEHVRN 186
NGNG + D+P T L +Q V + +G KI + + L+
Sbjct: 128 NGNGLNFEAKNDAPRRST-LHSQNAGPNVNSSLEGMKIAHGFQDLNKNDGLVLTLKDADI 186
Query: 187 LSKELQDNLHELENSVRLAEVENQEMNPTAPMLDYSEDHEFVSANQLD 330
L ++ D L +E R + E +E NP P Y ++++F+ ++ D
Sbjct: 187 LDEDNHDLLENVEMVQRKTKNERKEDNPYKP---YEDENDFLQQSEAD 231
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.3 bits (60), Expect = 0.82
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Frame = +1
Query: 133 VYGKPTEKQLRELEH-VRNLSKELQDNLHEL----ENSVRLAEVENQEMNPTAPMLDYSE 297
V T LR+ E+ +R K LQ+ L + E+S L E+++ N + ++ +
Sbjct: 260 VSSNKTVSTLRQTENSLRAECKTLQEKLEKCAINEEDSKLLEELKHNVANYSDAIVHKDK 319
Query: 298 DHEFVSA--NQLDNCYGEEDKVDAREEEKRKLTNDGRISLKASR 423
E +S ++ DN E D + + E+ KL + SLK SR
Sbjct: 320 LIEDLSTRISEFDNLKSERDTLSIKNEKLEKLLRNTIGSLKDSR 363
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 1.1
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 172 EHVRNLSKELQDNLHELENSVR-LAEVENQEMNPTAPMLDYSEDHEFVSANQLDNCYGEE 348
E +RN+ K D L +LEN+V+ L E ++ + + + + +E S + +N E
Sbjct: 1184 ERIRNIKKLKTDMLTKLENTVKYLCEYDSIDKVRNSFFKNLNSFYEMYSIAKAEN----E 1239
Query: 349 DKVDAREEEKRKLTNDGRISLKASR 423
++ E+EKR++ ++ R L R
Sbjct: 1240 ERF---EKEKRRIMSEDRDKLIRGR 1261
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 1.9
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = +1
Query: 103 QRKGEKIDIDVYGKPTEKQLRELEHVRNLSKELQDNLHELENSVRLAEVENQEMNPTAPM 282
QR+ ID+D + + + H RN+ + D+L + ++V +N+ T +
Sbjct: 81 QREDSTIDMDTIKILKTQDIGWIRHHRNVERAKIDHLEQQMHTVGAHRNKNESRKHTIFV 140
Query: 283 LDYSEDHEFVSA---NQLDNCYGE-EDKVDAREEEKRKLTN 393
+ E F A D+ G E++V + E +LTN
Sbjct: 141 DNVKEAKSFNPAEFFQTTDDLVGRTENRVKKDQIENNELTN 181
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +1
Query: 55 TDTSLTAQKMEKWVEAQRKGEKIDIDVYGKPTEKQLRELEHVRNLSKELQDNLHELENSV 234
+DTS E ++ ID+ + +E + L+H + + K Q L +L NS
Sbjct: 128 SDTSPLPITSSNQKEGKKNVSSIDVSMVSDSSEFKPDSLQHEKLVKKCNQLRLQKLINSS 187
Query: 235 RLAEVE 252
LA+++
Sbjct: 188 ELAQID 193
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 1.9
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +1
Query: 166 ELEHVR-NLSKELQDNLHELENSVRL-AEVENQEMNPTAPML-DYSEDHEFVSANQLDNC 336
E++ V+ ++SK + L E R + +N + + P+ D E+ E A++++
Sbjct: 130 EIKKVKVDISKVWRSILAEKPRVTRFNIQWDNPDFDDAPPVQPDADEEEEEEEADEMEEE 189
Query: 337 YGEEDKVDAREEEKRKLTNDG 399
+ EE + D EEE+ DG
Sbjct: 190 FDEEGEGDEEEEEEDDGDGDG 210
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 26.2 bits (55), Expect = 3.3
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +1
Query: 163 RELEHVRNLSKELQDNLHELENS--VRLAEVENQ-EMNPTAPMLDYSEDHEFVSANQ 324
+E+E VRN + Q +HEL ++ +AE++ Q E N A ++HE + +NQ
Sbjct: 119 KEIEEVRNEKEATQVKIHELLDAKWKEIAELKTQIEKNDQALS---EKNHEVMVSNQ 172
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 151 EKQLRELEHV-RNLSKELQDNLHELENSVRLAEVENQE 261
+++LR L+ + N + +NL E E+ + L ++ENQE
Sbjct: 31 DEKLRVLQLLLANCEQSRNENLQEKEHGLTLEDLENQE 68
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 217 ELENSVRLAEVENQEMNPTAPMLDYSEDHEFVSANQL 327
+L NSV+ + +Q++ P D + DH +S +QL
Sbjct: 234 QLLNSVKSMKKVSQQLKPQKNTNDSNNDHTLLSQDQL 270
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.8 bits (54), Expect = 4.4
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Frame = +1
Query: 145 PTEKQLRELEHVRNLSKELQDNLHELENSVRLAEVENQEMNPTAPMLDYSEDHEFVSANQ 324
P Q E+ HV L + L S + E++ + D E ++ + N
Sbjct: 309 PLSAQNSEIGHVNPLETFTSNGRKRL-TSPEIWELQQLAASGAISATDIPELNDGFNTNN 367
Query: 325 LDNCYGEEDK---VDAREEEKRKLTNDGRISLKAS 420
E+D+ ++ REEE L ++SLK S
Sbjct: 368 AAEINPEDDEDVEIELREEEPGFLAGQTKVSLKLS 402
>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 284
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 166 ELEHVRNLSKELQDNLHELE--NSVRLAEVENQEMNPTAPMLD-YSED 300
E++H+R+ ++++DN+ +E + L E++ + T L+ Y+ D
Sbjct: 24 EIDHIRDAIRQIEDNVGRIEMLHQQSLQEIDEANIAATTRHLEGYTSD 71
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 5.8
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 73 AQKMEKWVEAQRKGEKID-IDVYGKPTEKQLRELEHVRNLSKELQDNLHELENSVRLAEV 249
AQ E+ +R+ ++ D + K + K + E +N+ +Q L+EL+N+V +
Sbjct: 14 AQGQEEAKNRRRQFQEEDQLRRNNKSSNKLSQNEEDAKNMDSVVQ-KLNELQNNVVAFQK 72
Query: 250 ENQEMNPTAPMLDYSEDHEFV 312
QE P + + D EF+
Sbjct: 73 LLQEKTPLSSIQDLEGFREFM 93
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 322 QLDNCYGEEDKV-DAREEEKRKLTNDGRI 405
Q ++ E+D V D++EEE+R + ND I
Sbjct: 257 QSEDVDAEQDTVADSKEEERRDIANDDLI 285
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 205 DNLHELENSVRLAEVENQEMNPTAPMLDYSEDHEFVSANQLDNCYGEEDKVDAREEEKRK 384
D L L+ + ++E + + + S +L + E+DK+ A EE+RK
Sbjct: 343 DELRRLDRQIMTIQIELESLRKETDTTSVERREKLES--KLTDLKEEQDKLSAAWEEERK 400
Query: 385 L 387
L
Sbjct: 401 L 401
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.6
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 238 NAPSSPAHVNCPAAPCSSF*RARVLAIASQSVSRKRLCRSSPLSFGLRPTSPSSAP-SDW 62
++ SSP + + SS + ++S S+S SSP S +S SS+P S
Sbjct: 295 SSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSS 354
Query: 61 YPSTENPLANDSFF 20
+ ST + + S F
Sbjct: 355 FSSTTSSSKSSSSF 368
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = +1
Query: 148 TEKQLRELEHVRNLSKELQDNLHELENSVRLAEVENQEMNPTAPMLDYSEDH 303
T+ + + + +NL+ + + + +N L ++++E NP L+Y+ H
Sbjct: 296 TQHEQENMMNAQNLALCIGPSFSKADNIAELMSMKDKEYNPYCYFLEYAILH 347
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 118 KIDIDVYGKPTEKQLRELEHVRNLSKELQDNLHELENS 231
K+ IDV ++ REL + LS ++ +H +E S
Sbjct: 769 KLTIDVISGQQLRRARELSNSETLSPYVEIQVHSMEES 806
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +1
Query: 160 LRELEHVRNLSKELQDNLHELENSVRLAEVENQEM 264
LRELE +R+L+ +++ ++E ++ + EN+ +
Sbjct: 388 LRELEELRHLATSAKEDFVKVEKLNKIIKDENENL 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.130 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,769
Number of Sequences: 5004
Number of extensions: 29163
Number of successful extensions: 135
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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