Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C08
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...   108   4e-25
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...   107   1e-24
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   2.8  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   3.7  

>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  108 bits (260), Expect = 4e-25
 Identities = 46/79 (58%), Positives = 61/79 (77%), Gaps = 2/79 (2%)
 Frame = +2

Query: 2   KYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRTVAGGAWV 175
           KYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+  GIW C  K CK+ +AGGAW 
Sbjct: 13  KYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGGAWT 72

Query: 176 FSTTAASSCRSAVRRLREV 232
            +T AA+S RS +RRLRE+
Sbjct: 73  VTTAAATSARSTIRRLREM 91


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  107 bits (256), Expect = 1e-24
 Identities = 46/79 (58%), Positives = 60/79 (75%), Gaps = 2/79 (2%)
 Frame = +2

Query: 2   KYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRTVAGGAWV 175
           KYG RYGASLR+ V+K+EV QH++Y C FCG+  +KR+  GIW C  K C +T+AGGAW 
Sbjct: 13  KYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGAWT 72

Query: 176 FSTTAASSCRSAVRRLREV 232
            +T AA+S RS +RRLRE+
Sbjct: 73  VTTAAATSARSTIRRLREM 91


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 62  QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 151
           +H K T C  C +  +K  C  +W C+ CK+
Sbjct: 15  RHRKITSCRECHR--LKLKCDRVWPCENCKK 43


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 71  KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 160
           KY C  CG     + C  I S  RC +  A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,068
Number of Sequences: 5004
Number of extensions: 27081
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)