Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C08
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803...   113   6e-26
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603...   113   6e-26
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    29   2.8  
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116...    28   3.7  
07_01_0385 - 2871628-2872131                                           28   4.9  
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912...    27   6.5  

>05_07_0070 +
           27479654-27479672,27479864-27479922,27480339-27480378,
           27480477-27480565,27481065-27481147,27481219-27481282
          Length = 117

 Score =  113 bits (273), Expect = 6e-26
 Identities = 49/76 (64%), Positives = 59/76 (77%)
 Frame = +2

Query: 2   KYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFS 181
           KYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR  VGIW CK C +  AGGA+  +
Sbjct: 38  KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMN 97

Query: 182 TTAASSCRSAVRRLRE 229
           T +A + RS +RRLRE
Sbjct: 98  TASAVTVRSTIRRLRE 113


>01_06_0260 -
           27959188-27959251,27959342-27959424,27960220-27960308,
           27960388-27960427,27960938-27960981,27961240-27961288
          Length = 122

 Score =  113 bits (273), Expect = 6e-26
 Identities = 49/76 (64%), Positives = 59/76 (77%)
 Frame = +2

Query: 2   KYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFS 181
           KYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR  VGIW CK C +  AGGA+  +
Sbjct: 43  KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMN 102

Query: 182 TTAASSCRSAVRRLRE 229
           T +A + RS +RRLRE
Sbjct: 103 TASAVTVRSTIRRLRE 118


>07_03_0481 -
           18572206-18574314,18574591-18575185,18575304-18575371,
           18577344-18577458,18578179-18578333,18578673-18580621,
           18580691-18581372,18581550-18581621,18582558-18583199,
           18583301-18583402,18585011-18585100
          Length = 2192

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 89  CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLR 226
           C    +KR+  G W C RC+        + +  A +S R   RR+R
Sbjct: 58  CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103


>12_01_0151 -
           1158834-1159703,1159917-1160092,1160144-1162097,
           1162360-1162620,1162729-1162916,1164127-1164166
          Length = 1162

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 64  LSYFHLFDHFT*RCTITCAIF 2
           LSYFHL DH   +C + C+IF
Sbjct: 314 LSYFHLPDHLK-QCFVYCSIF 333


>07_01_0385 - 2871628-2872131
          Length = 167

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 74  YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 172
           + C FC K   K   +G       K  VAGG+W
Sbjct: 47  FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79


>12_02_0648 +
           21490202-21490296,21490547-21490634,21491216-21491260,
           21491355-21491387,21491480-21491557,21491647-21491690,
           21491765-21491805,21492102-21492184,21492261-21492352,
           21492468-21492537,21492838-21492876,21493670-21493687,
           21494586-21494713,21495235-21495358,21495585-21495716,
           21496092-21496223,21496582-21496665
          Length = 441

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 53  EVTQHAKYTCSFCGKDAM 106
           E+ +H KYTC  C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,683,387
Number of Sequences: 37544
Number of extensions: 164918
Number of successful extensions: 405
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)