Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C05
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         27   1.5  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    27   2.0  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   3.5  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   4.6  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   4.6  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    25   6.1  

>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +3

Query: 174 VVAHLVPEKRADISA-DLILSGSKKNIAH-GALFLKDNTIKSEYGASKDNFNHLMTTVKK 347
           V  H++P K+AD S  DL+ S  +KN  +  +L+L  N     Y   +     +   + K
Sbjct: 96  VHVHIIPRKKADFSENDLVYSELEKNEGNLASLYLTGN---ERYAGDERPPTSMRQAIPK 152

Query: 348 DVEGLNDRIKDLGEKSSQ 401
           D E    R  +  EK +Q
Sbjct: 153 D-EDRKPRTLEEMEKEAQ 169


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 381 LGEKSSQDFENLLKRATPYFKRIDDDFRAEWD 476
           L E S+ D ENL K  +P F  ++  F+   D
Sbjct: 52  LSENSNSDSENLAKTLSPIFDNLESVFKKGTD 83


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -2

Query: 136 KYWKSFIRVFICT--TFPSNRQTLNS 65
           KYW  F R+F+ T   FP N   LNS
Sbjct: 140 KYWSDFNRLFLDTEYLFPVNCSELNS 165


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 405 FENLLKRATPYFKRIDDDFRAEWDK 479
           F  + K+  P+ KRI D+  +EW +
Sbjct: 291 FYTISKKPEPFIKRIADNLVSEWSR 315


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +3

Query: 204 ADISADLILSGSKKNIAHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDL 383
           AD+S  ++   SK+N  H AL      + S     KD+  + ++   + ++ L D  +D 
Sbjct: 466 ADLSEQIVELESKRNDLHSALLEMGGNLTSLL-TKKDSIANKISDQSEHLKVLEDVQRDK 524

Query: 384 GEKSSQDFENLLKRAT 431
                ++   LLK  T
Sbjct: 525 VSAFGKNMPQLLKLIT 540


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 318 FNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDF 461
           F  L+ T++ D+EGLN  +    + S +  +  ++R     + +D+ F
Sbjct: 133 FQSLLKTLETDIEGLN-LVDHTHDPSDESIKQTVQRLRSSIEGLDEAF 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,666
Number of Sequences: 5004
Number of extensions: 49291
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)