Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_C05
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0117 - 6779121-6779582 36 0.023
02_04_0259 - 21345100-21345891,21347081-21347516,21347602-21348161 31 0.66
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900... 29 3.5
10_08_0431 + 17871432-17871593,17871684-17871714,17872898-178730... 28 4.7
07_01_0613 - 4535892-4536331,4536462-4536543,4537493-4537576,453... 28 6.2
05_03_0323 - 12424243-12424776 28 6.2
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245... 28 6.2
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 28 6.2
>05_02_0117 - 6779121-6779582
Length = 153
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 288 KSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRA 467
+ Y S +++ L T V+GL++ + KS NLLK+A F+ R
Sbjct: 49 REAYYESPEDYPLLRTNNPVKVDGLSEEWVEKNSKSVIKTANLLKKADDSFEEFQKQVRK 108
Query: 468 EWDKFYKEISVD 503
E +K Y E+ +D
Sbjct: 109 EVEKGYYEVGMD 120
>02_04_0259 - 21345100-21345891,21347081-21347516,21347602-21348161
Length = 595
Score = 31.1 bits (67), Expect = 0.66
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +3
Query: 213 SADLILSGSKKNIAHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEK 392
S L+L + +A + L D+ + +YG S ++D++GLN I + E
Sbjct: 89 SLQLVLFSRQWGLAESLVALADHQLMLDYGLSVALDAIWFLRTEQDLQGLNHLIGKIVES 148
Query: 393 SSQDFENLLKRAT 431
++DF + R +
Sbjct: 149 GAKDFARAILRTS 161
>01_01_1135 -
9003823-9004182,9004308-9004367,9004441-9004683,
9005207-9005305,9005807-9005986,9006090-9006164
Length = 338
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 336 TVKKDVEGLNDRIKDLGEKSSQDFENLLKRAT 431
T+++ E +ND K+LGE SS++ ++ L A+
Sbjct: 18 TLEEQQEKINDLRKELGEHSSEEIQDFLSDAS 49
>10_08_0431 +
17871432-17871593,17871684-17871714,17872898-17873005,
17873251-17873353,17874069-17874115,17874116-17874291,
17874736-17874822
Length = 237
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 192 PEKRADISADLILSGSKKNIAHGALFL-KDNTIKSEYGASKDNFNHLMTTVKKDVEGLND 368
P+ A I+ GSKKN H L +DN K +Y SKD + + + L D
Sbjct: 146 PKTPAGIARCFTYGGSKKNTLHDPKILPRDNLSKEKY-MSKDEKQTSINHFHEKLFKLKD 204
Query: 369 RIK-DLGEKSSQ 401
+K + G+K ++
Sbjct: 205 MMKTEAGKKRAE 216
>07_01_0613 -
4535892-4536331,4536462-4536543,4537493-4537576,
4537669-4537845,4538192-4538351,4539357-4539685
Length = 423
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 450 DDDFRAEWDKFYKEISVDKVFKEFSHTLNEVLHYLAK 560
DD+FR +WD ++ K+ +EF ++H++ K
Sbjct: 189 DDEFRLKWDPM---LAYFKILEEFPQNGTMIIHWIKK 222
>05_03_0323 - 12424243-12424776
Length = 177
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 294 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFE 410
+Y A +D M + +EG+ D + EK+ QDFE
Sbjct: 24 QYKALRDVLRREMNSRMDTLEGITDELSQKFEKTIQDFE 62
>02_05_0258 +
27222058-27223198,27223297-27223460,27224399-27224575,
27224713-27224761,27224991-27225793
Length = 777
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -2
Query: 544 RTSFRVCENSLNTLSTEISL*NLSHSALKSSSIRLKYGVARFRRFSKSWLD 392
R++ VC + N L++E L H KSS + K +A F RF K W D
Sbjct: 494 RSTCVVCLSESNCLNSEDIL--AFHIIFKSSLCQKKSLIAIFYRFVKMWQD 542
>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 231 SGSKKNIAHGALFLKDNTIKSEYGASKDN 317
SG K N+ HG++FL +T ++ S DN
Sbjct: 996 SGKKMNMVHGSIFLDISTGRTSSDVSIDN 1024
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,566,765
Number of Sequences: 37544
Number of extensions: 285626
Number of successful extensions: 685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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