Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C04
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   3.1  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   5.4  
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    25   9.5  

>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 246 YACRGRLVYAIRVLWTFSERNTRAVDV 326
           Y CR  ++Y I  LW   ER  R   +
Sbjct: 160 YMCRACVIYPITPLWDAKERTMRKATI 186


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 412 RFCNLFIHLWTRLTPSYIKHSQHACWVY*TSTARV 308
           R+  L  H+  +L  S+++HS+++ W   +S A++
Sbjct: 593 RYFLLLRHVEMQLENSWVQHSKNSAWRLNSSNAKI 627


>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 531 ILNGRPIVHR*YIEMLPKRYKFCSCN 454
           IL   P VH     +  K + FC+CN
Sbjct: 2   ILRHAPRVHESAFSLTHKTFAFCNCN 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,570
Number of Sequences: 5004
Number of extensions: 38344
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)