Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C04
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924...    28   4.1  
02_01_0715 - 5346036-5346557                                           28   5.5  
02_05_1155 + 34519080-34519313,34519622-34519665,34519901-345199...    27   7.2  

>04_04_0276 +
           24091360-24091464,24091580-24091713,24091813-24092454,
           24092858-24093044
          Length = 355

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 182 AAGGSCTRCTRYARCGRLVYAIC 250
           A GG CTRC R  +  RL  ++C
Sbjct: 253 APGGGCTRCKRMVQLFRLHASVC 275


>02_01_0715 - 5346036-5346557
          Length = 173

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 273 RTLNVHGTHIAYTKRPQRAYRVQRVQEPPAACAYCVRNVSYKIFDCPVTLLMC 115
           +TL V  T +A T   +    V +V+E P  CA C + V    F+C    + C
Sbjct: 85  KTLVVQPTDVAGTS--EEVAVVPKVKEGPNRCATCRKRVGLTGFNCRCGNMYC 135


>02_05_1155 +
           34519080-34519313,34519622-34519665,34519901-34519973,
           34520895-34521043,34521698-34521859,34522301-34522360,
           34522716-34522776
          Length = 260

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 151 VRDISYAIRARCGRFLYALYTIRALWTF 234
           +R + Y  R  C R L   YT++ LW++
Sbjct: 228 LRSLQYRDRGACPRSLEKKYTLKLLWSY 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,318
Number of Sequences: 37544
Number of extensions: 247291
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)