Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C04
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
 Frame = +1

Query: 163 SYAIRARCGRFLYALYTIRALWTFSV-RNMRAVDV*CTQYACCGRLVNAIRVLWTFSIP 336
           SYA+   C  FL     I   W F V R    +      Y CC       ++ WT + P
Sbjct: 447 SYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCW-----WKICWTITTP 500


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
 Frame = +1

Query: 163 SYAIRARCGRFLYALYTIRALWTFSV-RNMRAVDV*CTQYACCGRLVNAIRVLWTFSIP 336
           SYA+   C  FL     I   W F V R    +      Y CC       ++ WT + P
Sbjct: 500 SYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCW-----WKICWTITTP 553


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 435 DSHYSNSHDFVTYLF 391
           D H++  HD + +LF
Sbjct: 23  DPHFAPGHDAIVHLF 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,006
Number of Sequences: 438
Number of extensions: 2647
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)