Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_C03
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 31 0.094
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 29 0.67
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 29 0.67
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.67
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 26 3.5
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 3.5
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 26 3.5
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 26 4.7
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 26 4.7
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac... 25 6.2
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 25 8.2
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 8.2
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 31.5 bits (68), Expect = 0.094
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 302 LWPKEWYAGVKEIAVKSPFLVSQTSLRSEM-RELQYTSAVRNDSVSINELQ 451
+W K+W + I + FL S T L S++ R+L S V ++ +I ELQ
Sbjct: 1081 IWKKQWERELNAIVQEQEFLDSHTVLISDLKRDLSALSTVLSNVSAIAELQ 1131
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 28.7 bits (61), Expect = 0.67
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 266 CVVMGFTAAESGLWPKEWYAGVKEIAVKSPFLVSQTSLRSEMREL 400
CV+MGF ES +P+ + +A+ + F S T+ S M ++
Sbjct: 44 CVIMGFCQTESVFFPRPKHNATFLLAITTGFCGSLTTFSSWMLQM 88
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 28.7 bits (61), Expect = 0.67
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -1
Query: 480 NRFRIWVFSSWSSFIDTESFLTADVYCNSRISERSDVCETR--NGDLTAISFTPAY 319
+RF + + SW F + F+ + C + +SE C R NG I PAY
Sbjct: 1771 DRFSLKMLESWGLFENKAPFVNSTSICTA-VSESRSCCHLRYLNGAAPVIYGIPAY 1825
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 28.7 bits (61), Expect = 0.67
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 266 CVVMGFTAAESGLWPKEWYAGVKEIAVKSPFLVSQTSLRSEMREL 400
CV+MGF ES +P+ + +A+ + F S T+ S M ++
Sbjct: 44 CVIMGFCQTESVFFPRPKHNATFLLAITTGFCGSLTTFSSWMLQM 88
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 332 KEIAVKSPFLVSQTSLRSEMRELQYTSAVRNDSVSINELQELKTQILNL 478
+EI K P L S + LRS+M+ + A +S + +L ELK + L +
Sbjct: 124 EEIRKKYPSLFSNSPLRSDMQAVVNEHAGYANSAASLKLLELKARELGV 172
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 134 LKASSSAGNLGVLIPVIAVLVKRLPPIKNPK 226
LKASS A +GVL +A ++ + P +K P+
Sbjct: 164 LKASSMADYIGVLSSKLACIISK-PAVKTPE 193
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 181 YCRFSKKVTSDKEPKAQVTQ 240
YC ++KV +DK+ KAQV Q
Sbjct: 27 YCHATEKVIADKKIKAQVYQ 46
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 4.7
Identities = 20/83 (24%), Positives = 33/83 (39%)
Frame = +2
Query: 308 PKEWYAGVKEIAVKSPFLVSQTSLRSEMRELQYTSAVRNDSVSINELQELKTQILNLLDH 487
P + YA + + LV+ T E+ E A R E +E Q+ +L
Sbjct: 499 PIDEYAVTQLKEFEGKKLVNITKDGLELEETDEEKAAREKLEK--EYEEFAKQLKTILGD 556
Query: 488 PPDVTVIVNKLTFAPCMYILSVY 556
+ V+ NK+ +PC+ Y
Sbjct: 557 KVEKVVVSNKIVGSPCLLTTGQY 579
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 25.8 bits (54), Expect = 4.7
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = -1
Query: 462 VFSSWSSFIDTESFLTADVYCNSRISERSDVCE-------TRNGDLTAISFTPAYHSFGQ 304
+F S + I+ +FLTA RIS R+D+ E T++G + + A S G
Sbjct: 89 MFESINPPINLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGD 148
Query: 303 SPDSAAVKPITTQY 262
D V+ I Y
Sbjct: 149 RMDPQEVESILRSY 162
>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 166 RTNTSYCRFSKKVTSDKEPKAQVTQT 243
R+N+S KKV+S++ P VT T
Sbjct: 26 RSNSSQSHIGKKVSSEQSPTPDVTIT 51
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 378 SDVCETRNGDLTAISFTPAYHSFGQ 304
S ET NG+L A +F PA + Q
Sbjct: 282 SQTVETGNGELCAANFIPAVYVLNQ 306
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 245 FKDFWLYCVVMGFTAAESGLWPKEWYAGVKEIAV 346
F DFW V G ++ S L K W + E+A+
Sbjct: 271 FHDFWAVVVDEGIFSSTSSLERKFWGFQIMELAL 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,354
Number of Sequences: 5004
Number of extensions: 45195
Number of successful extensions: 139
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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