Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_C03
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878... 40 0.002
12_02_0750 + 22764481-22764771,22764871-22765383,22765470-227656... 31 0.52
06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,758... 31 0.90
10_08_0460 - 18098187-18098248,18098331-18098399,18098468-180994... 30 1.2
09_06_0073 + 20687057-20687246,20689004-20689203,20689786-206899... 30 1.6
08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461 29 3.6
08_02_1489 + 27490143-27490365,27490731-27490732,27491606-274916... 28 4.8
02_01_0292 + 1949926-1950037,1950121-1950250,1950551-1950616,195... 28 4.8
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 27 8.4
03_01_0618 + 4543013-4543111,4544100-4544177,4544739-4544873,454... 27 8.4
>03_05_0884 -
28487013-28487271,28487355-28487516,28487594-28487802,
28488490-28488630,28488876-28489071,28489207-28489379,
28490095-28490142,28490301-28490378,28490526-28490792,
28491689-28491842,28491928-28492064,28492459-28492536,
28493039-28493216,28493589-28493803,28494063-28494422,
28494497-28494973,28495561-28495665,28495838-28496020,
28496105-28496263,28496937-28497154,28497737-28497905,
28498262-28498568,28498699-28498826,28498902-28499060,
28499194-28499364,28500258-28500376,28500604-28500853,
28501007-28501759
Length = 1950
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 146 SSAGNLGVLIPVIAVLVKRLPPIKNPKPRLHKLFKDFWLYCVVMG 280
S A +G L+P +A + P+ +P L KLF++ W Y V+ G
Sbjct: 528 SGADLMGPLLPAVAEICSDFDPVSTVEPSLLKLFRNLWFYIVLFG 572
>12_02_0750 +
22764481-22764771,22764871-22765383,22765470-22765601,
22765731-22766108
Length = 437
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = +2
Query: 308 PKEWYAGVKEIAVKSPFLVSQTSLRSEMRELQYTSAVRNDSVSINELQELKTQILNLLDH 487
P W+ G +++P L + L ++ LQ + V V ++ ++ + L
Sbjct: 230 PVIWHEGFVIRVIQAPKLKTLGYLSQKISTLQLGNMVFQKLVPVSLSNVMRAMKILALHT 289
Query: 488 PPDVTVIVNKLTFAPCM 538
PD+ V+++ L F PC+
Sbjct: 290 APDLDVVIDFLKFFPCV 306
>06_01_0977 +
7585817-7585970,7586057-7586146,7586500-7586702,
7587274-7587452,7587913-7587991,7588403-7588537,
7588651-7588800,7588887-7588997,7589084-7590004,
7590351-7590623,7590853-7591062,7591425-7591573,
7591716-7592052
Length = 996
Score = 30.7 bits (66), Expect = 0.90
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 107 ATDRSPAPVLKASSSAGNLGVLIPVIAVLVKRLPPIKNPKPR 232
AT RSP P+L + +A L VL+P ++ +RL +P+PR
Sbjct: 11 ATSRSPLPLLSTAPAAHRLHVLLP-LSGRRRRLCLRSSPRPR 51
>10_08_0460 -
18098187-18098248,18098331-18098399,18098468-18099434,
18100089-18100808,18100942-18101031,18101076-18101138,
18101223-18101366,18101471-18101527,18101606-18101680,
18101757-18101836,18101937-18102050,18102166-18102258,
18102470-18102553,18102812-18102859,18105207-18105337,
18105903-18106135
Length = 1009
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -1
Query: 453 SWSSFIDTES-FLTADVYCNSRISERSDVCETRNGDLTAISFTPAYHSFGQSPDSAAVKP 277
S++S + T S + + + SR+ E+ + E RN DL S +Y F + +SA + P
Sbjct: 293 SFTSMLQTPSAYNNSMILTTSRVCEQDMLLEDRNNDLLIPSKHYSYQEFDEIYNSARITP 352
>09_06_0073 +
20687057-20687246,20689004-20689203,20689786-20689926,
20689995-20690075,20690564-20690688,20690763-20690807,
20691853-20691877,20692282-20693073
Length = 532
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 467 ILNLLDHPPDVTVIVNKLTFAPCMYILSVYWLETLRV 577
+L LL HP IVN++++A C+Y+ +V L LR+
Sbjct: 136 VLALLIHPSTSHNIVNRISWAFCVYLEAVSVLPQLRL 172
>08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461
Length = 874
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 389 MRELQYTSAVRNDSVSINELQELKT-QILNLLDHPPDVTVIVNKLTFAPCMYILSVYWLE 565
+ LQ ++ S + EL +LK + LNLL + D + T A C+ L Y L
Sbjct: 619 LETLQAVDLSKHSSNIVKELGQLKNLRELNLLIYDYDACTEEHMKTIASCLLQLGTYNLR 678
Query: 566 TLRVCNS 586
L + S
Sbjct: 679 RLNIMTS 685
>08_02_1489 +
27490143-27490365,27490731-27490732,27491606-27491651,
27491892-27492091,27492505-27492645,27492730-27492810,
27493353-27493477,27493552-27493600
Length = 288
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 470 LNLLDHPPDVTVIVNKLTFAPCMYILSVYWLETLRV 577
L LL HP I+N++++A C+Y+ +V L LR+
Sbjct: 164 LALLVHPSTSHNIINRISWAFCVYLEAVSVLPQLRL 199
>02_01_0292 +
1949926-1950037,1950121-1950250,1950551-1950616,
1950718-1950789,1951198-1951607,1951789-1951994,
1952121-1952407,1952527-1952665,1952746-1953141
Length = 605
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 547 QYIHAGGKRQFVHNH 503
+Y+H GG+RQ VH H
Sbjct: 428 EYLHEGGQRQVVHQH 442
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 434 IRNRSSPRTCTVTLAFPNEATFAR 363
I N +PR+CT+ + PN+ T A+
Sbjct: 382 IENVKNPRSCTILIKGPNDHTIAQ 405
>03_01_0618 +
4543013-4543111,4544100-4544177,4544739-4544873,
4544971-4545078,4545397-4545525,4546191-4546306,
4546392-4546509,4547274-4547379,4547492-4547631,
4547735-4547905,4547984-4548094,4548206-4548317,
4548615-4548943,4549064-4549154,4549542-4549637,
4549710-4549780,4549868-4549980,4550353-4550434
Length = 734
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -1
Query: 495 SGG*SNRFRIWVFSSWSSFIDTESFLTADVYCNSRISERSD-VCETRNGDLTAISFTPAY 319
SG R IW +++ D ++ +A+++C + E SD V + GD F +
Sbjct: 53 SGSDDTRIGIWSYANRELLHDIDTGHSANIFCTKFVPETSDEVIVSGAGDAEVRVFNLSR 112
Query: 318 HSFGQSPDSAAVKP 277
S G+ P +++P
Sbjct: 113 LS-GKRPVEISMEP 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,276
Number of Sequences: 37544
Number of extensions: 335323
Number of successful extensions: 987
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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