Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C03
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical...   167   5e-42
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      30   1.1  
AF067622-4|ABD63224.1|  338|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z95559-3|CAB08998.1|  786|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U64605-8|AAF98602.1|  472|Caenorhabditis elegans Sorting nexin p...    27   9.9  
AL132948-18|CAD31819.1|  390|Caenorhabditis elegans Hypothetical...    27   9.9  

>AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
            protein Y75B8A.24 protein.
          Length = 2121

 Score =  167 bits (406), Expect = 5e-42
 Identities = 76/170 (44%), Positives = 113/170 (66%)
 Frame = +2

Query: 77   FVQLGLGGERATDRSPAPVLKASSSAGNLGVLIPVIAVLVKRLPPIKNPKPRLHKLFKDF 256
            FVQLG+ G R  ++     +K S+SAGNLGVL+P IA L++R+ PI  P  +L  LF+DF
Sbjct: 719  FVQLGIEGRRVGEKVSKSTVKMSTSAGNLGVLMPKIASLLRRMQPISEPTTKLRSLFRDF 778

Query: 257  WLYCVVMGFTAAESGLWPKEWYAGVKEIAVKSPFLVSQTSLRSEMRELQYTSAVRNDSVS 436
            W YC V+GF    S LWP+EWY  V E A K+P L++  +LRSE+ +    +A+R+DS+S
Sbjct: 779  WFYCTVLGFDVESSSLWPEEWYNAVCETATKTPVLIATENLRSELID---NAAIRSDSIS 835

Query: 437  INELQELKTQILNLLDHPPDVTVIVNKLTFAPCMYILSVYWLETLRVCNS 586
              ELQE++  +L  L H  +   ++N+  FA C Y+LSV+ +ET+R+ ++
Sbjct: 836  PQELQEMRNTVLAELSHQAEAVPLINRFDFANCTYLLSVHRMETMRLIHA 885


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 314 EWYAGVKEIAVKSPFLVSQTSLRSEMRELQ-YTSAVRNDSVSINELQELKTQILNLLD 484
           EW+  +KE+ V++  + S   L     EL    + + +  + I EL +L+ ++  L+D
Sbjct: 92  EWWTKIKELMVETTRIGSFEDLMDSFNELLIIKTKIESGGIPIEELSKLRLRVSKLVD 149


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 314 EWYAGVKEIAVKSPFLVSQTSLRSEMRELQ-YTSAVRNDSVSINELQELKTQILNLLD 484
           EW+  +KE+ V++  + S   L     EL    + + +  + I EL +L+ ++  L+D
Sbjct: 92  EWWTKIKELMVETTRIGSFEDLMDSFNELLIIKTKIESGGIPIEELSKLRLRVSKLVD 149


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 314 EWYAGVKEIAVKSPFLVSQTSLRSEMRELQ-YTSAVRNDSVSINELQELKTQILNLLD 484
           EW+  +KE+ V++  + S   L     EL    + + +  + I EL +L+ ++  L+D
Sbjct: 92  EWWTKIKELMVETTRIGSFEDLMDSFNELLIIKTKIESGGIPIEELSKLRLRVSKLVD 149


>AF067622-4|ABD63224.1|  338|Caenorhabditis elegans Hypothetical
           protein F33E11.6a protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 359 LVSQTSLRSEMRELQYTSAVRNDSVSINELQELKTQILNLLDHPPDV 499
           +VSQ    +++ + +   A++NDSV + EL+    Q  N +D   D+
Sbjct: 154 VVSQREREAQLEKAKEMEAIKNDSVKLAELRRKAVQ--NAVDFNKDI 198


>AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical
           protein F33E11.6b protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 359 LVSQTSLRSEMRELQYTSAVRNDSVSINELQELKTQILNLLDHPPDV 499
           +VSQ    +++ + +   A++NDSV + EL+    Q  N +D   D+
Sbjct: 154 VVSQREREAQLEKAKEMEAIKNDSVKLAELRRKAVQ--NAVDFNKDI 198


>Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical
           protein F25H2.2 protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 429 ESFLTADVYCNSRISERSDVCETRNGDLTAISFTPAYH 316
           +S  T+D + NSR S RSD   + +     I F P  H
Sbjct: 11  DSQTTSDEHINSRHSSRSDTASSSSSFTPQIIFNPRPH 48


>Z95559-3|CAB08998.1|  786|Caenorhabditis elegans Hypothetical
           protein Y41E3.4 protein.
          Length = 786

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 174 ISTPRLPALLEAFRTGAGDRSVARSPPRP 88
           ++TP+   LL+A     G + V R PP P
Sbjct: 250 VTTPKTAELLKAHVAAVGGKVVTRFPPEP 278


>U64605-8|AAF98602.1|  472|Caenorhabditis elegans Sorting nexin
           protein 1 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = +2

Query: 239 KLFKDFWLYCVVMGFTAAESGLWPKEWYAGVKEI--AVKSPFLVSQTSLRSEMRELQYTS 412
           K+FK+F +    M F   E   W ++  + V E+  A++  + V++T + S  R++  + 
Sbjct: 233 KIFKNFQVVFSKMAFHMEEGDRWFEQVQSQVDELDEALRKLYTVTETLVASR-RDMATSG 291

Query: 413 AVRNDSVSINELQELKTQILNLLDHPPDVT 502
                ++S+    E  T +   L    DVT
Sbjct: 292 EQLGKALSMLAACEESTSLSRALSSLTDVT 321


>AL132948-18|CAD31819.1|  390|Caenorhabditis elegans Hypothetical
           protein Y39B6A.22 protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 155 GNLGVLIPVIAVLVKRLPPIKNPKPRLHKLFKDFWLYCVVMGFTAAESGL 304
           G LG+  P +AV  +  PP++N  P+L       WL  V+ G      GL
Sbjct: 176 GVLGLAWPPVAV-DQITPPMQNLMPQLDAPIFTLWLDRVLQGSQGGSGGL 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,091,698
Number of Sequences: 27780
Number of extensions: 263711
Number of successful extensions: 729
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)