Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C03
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    28   0.059
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   3.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 28.3 bits (60), Expect = 0.059
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 402 CNSRISERSDVCETRNGDLTAISFTPA 322
           CN +     D  E RNG++T   FTPA
Sbjct: 563 CNKKQPSDCDTLEYRNGEVTTPLFTPA 589


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 230 RLHKLFKDFWLYCVVMGFTAAESGLWPK 313
           ++ K+  DFW+  V  G     S  WP+
Sbjct: 487 KMQKVLIDFWVSFVNNGVPNVNSVQWPR 514


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 230 RLHKLFKDFWLYCVVMGFTAAESGLWPK 313
           ++ K+  DFW+  V  G     S  WP+
Sbjct: 487 KMQKVLIDFWVSFVNNGVPNVNSVQWPR 514


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -1

Query: 405 YCNSRISERSD--VCETRNGDLTAISFTPAYHSFGQSP 298
           YC   ++  +    C T+NGD T I       + GQ+P
Sbjct: 11  YCTWELNATNSPHTCRTKNGDYTKI-MPDILTAIGQTP 47


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -1

Query: 456 SSWSSFIDTESFLTADVYC 400
           S+++SF+ ++S  + +VYC
Sbjct: 88  STYNSFLSSDSASSGNVYC 106


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 263 YCVVMGFTAAESGLWPK 313
           +C V GF  A    WP+
Sbjct: 393 FCTVEGFITAAVDEWPR 409


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 263 YCVVMGFTAAESGLWPK 313
           +C V GF  A    WP+
Sbjct: 446 FCTVEGFITAAVDEWPR 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,130
Number of Sequences: 438
Number of extensions: 3112
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)