Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C02
         (525 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.6  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   3.8  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   3.8  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   3.8  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   5.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   5.0  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +2

Query: 368 CPEGGRDNSNQTC-YNCNKGSGHISRNCPDGTKTCYVCG-KPGHISRDCDEERN 523
           CP G    + QT   +C + S      C DG  + Y+C  KPG    +C    N
Sbjct: 11  CPLGFSGINCQTNDEDCTETSCMNGGTCIDGINS-YICTCKPGFTGSNCQNRIN 63



 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/34 (23%), Positives = 14/34 (41%)
 Frame = +2

Query: 368 CPEGGRDNSNQTCYNCNKGSGHISRNCPDGTKTC 469
           C  G     + T Y C+   G+  ++C +    C
Sbjct: 70  CLNGATCQDHTTHYTCHCPYGYTGKDCGEYVDWC 103



 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +2

Query: 407 YNCNKGSGHISRNCPDGTKTC 469
           Y+CN   G + R+C      C
Sbjct: 322 YHCNCKLGFMGRHCESKVNFC 342


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +2

Query: 293 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRDN 391
           A E        SC   N +  ++ NC   GR N
Sbjct: 227 ALESPNPASRSSCLGSNTSSMLSLNCLNTGRTN 259


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +2

Query: 293 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRDN 391
           A E        SC   N +  ++ NC   GR N
Sbjct: 16  ALESPNPASRSSCLGSNTSSMLSLNCLNTGRTN 48


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +2

Query: 293 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRDN 391
           A E        SC   N +  ++ NC   GR N
Sbjct: 16  ALESPNPASRSSCLGSNTSSMLSLNCLNTGRTN 48


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 329 CYNCNKTGHIARNCPEGGRDNSNQTCYNC 415
           C +CNK+   A N     R +S +  + C
Sbjct: 24  CIDCNKSFSQAANLTAHVRTHSGEKPFRC 52


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 329 CYNCNKTGHIARNCPEGGRDNSNQTCYNC 415
           C +CNK+   A N     R +S +  + C
Sbjct: 280 CIDCNKSFSQAANLTAHVRTHSGEKPFRC 308


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,160
Number of Sequences: 336
Number of extensions: 2221
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12678017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)