Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C01
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089...    27   9.8  
05_07_0262 + 28769335-28769391,28769732-28769855,28770175-287702...    27   9.8  

>10_08_0190 +
           15607241-15607409,15607932-15607990,15608883-15608991,
           15609394-15609551,15609976-15610044,15610158-15610847,
           15611112-15611629,15611725-15611789,15613010-15613089,
           15613894-15613998,15614768-15614881,15615029-15615168,
           15615257-15615385,15615903-15616055,15616186-15616327
          Length = 899

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = -1

Query: 271 YCNNT-----CIYTYGFNNDRDVME*LVTNESTYN*THHAR 164
           YCN T     C  + G+NN R++M   +    T N   H R
Sbjct: 215 YCNQTIEMISCSQSSGYNNSRNLMGLNIDKRKTLNTREHTR 255


>05_07_0262 +
           28769335-28769391,28769732-28769855,28770175-28770266,
           28770673-28771078,28772057-28772184,28772273-28772332,
           28772814-28772963,28772999-28773061,28773062-28773217,
           28773361-28773572,28773698-28773796,28774343-28774512,
           28774592-28775040
          Length = 721

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 260 VIAIYITISSCSAFESISMTCKYVLE*ARCDVH*ASDSRVTQFLYKY 400
           VIA++I    C    ++    +YV+E A+CDVH  S +   +F  +Y
Sbjct: 61  VIALFIMDEMCDPASNL----EYVVEKAKCDVHRTSSAE--EFFTEY 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,602,435
Number of Sequences: 37544
Number of extensions: 230531
Number of successful extensions: 441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)