Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C01
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70207-2|CAA94130.2|  635|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AJ512338-1|CAD54511.1|  635|Caenorhabditis elegans trehalase pro...    29   2.9  
Z49937-1|CAA90184.2|  670|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z82055-7|CAB04849.1|  387|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z70207-2|CAA94130.2|  635|Caenorhabditis elegans Hypothetical
           protein F15A2.2 protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 207 WSQTSQHITKPIMHGHNTYEQILLSYFFIIPKHSYDVFF 91
           W + ++  T  + H  + Y  I +   FI+P   +DV+F
Sbjct: 151 WERLARQFTSDVQHHPDLYPLIPVQNPFIVPGGRFDVYF 189


>AJ512338-1|CAD54511.1|  635|Caenorhabditis elegans trehalase
           protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 207 WSQTSQHITKPIMHGHNTYEQILLSYFFIIPKHSYDVFF 91
           W + ++  T  + H  + Y  I +   FI+P   +DV+F
Sbjct: 151 WERLARQFTSDVQHHPDLYPLIPVQNPFIVPGGRFDVYF 189


>Z49937-1|CAA90184.2|  670|Caenorhabditis elegans Hypothetical
           protein F14F3.2 protein.
          Length = 670

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 14  HGILSYH*NYSFFFIYFVN*SYYFCMKKTSYE 109
           HG LS H  Y FFF  F   S++ C +K  ++
Sbjct: 212 HGQLS-HRIYEFFFYVFDRFSFFMCNRKADHK 242


>Z82055-7|CAB04849.1|  387|Caenorhabditis elegans Hypothetical
           protein T26H2.8 protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +2

Query: 167 CMMGLVIC*LVCDQSLHYVTIVIKPVCVNTCVI 265
           CM+GL+IC ++   +L Y   +++   ++T  +
Sbjct: 281 CMIGLMICCIIISSNLMYPPALVQEAMLHTSTV 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,010,232
Number of Sequences: 27780
Number of extensions: 249624
Number of successful extensions: 549
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)