Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B24
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 165 2e-41
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 149 1e-36
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 128 4e-30
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 107 6e-24
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 30 1.0
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 30 1.0
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 30 1.0
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 30 1.0
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 27 7.2
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 165 bits (401), Expect = 2e-41
Identities = 78/151 (51%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
Frame = +1
Query: 127 EVAAAPLVVKKVEP--KKIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKA 300
+VAA P ++ K++ NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A
Sbjct: 10 KVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSA 69
Query: 301 VLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEP 480
+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+ E
Sbjct: 70 ILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEE 129
Query: 481 PPKRPNTLRAGTSTVTKLVEKKKAQLVVIAH 573
KRPNT+R G +T+T+LVE ++AQLV+IAH
Sbjct: 130 VTKRPNTVRHGVNTITRLVETRRAQLVLIAH 160
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 149 bits (362), Expect = 1e-36
Identities = 77/151 (50%), Positives = 102/151 (67%), Gaps = 2/151 (1%)
Frame = +1
Query: 127 EVAAAPLVVKKVEP--KKIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKA 300
+VAA P ++ K++ NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A
Sbjct: 10 KVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSA 69
Query: 301 VLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEP 480
+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 70 ILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVT------------------ 111
Query: 481 PPKRPNTLRAGTSTVTKLVEKKKAQLVVIAH 573
KRPNT+R G +T+T+LVE ++AQLV+IAH
Sbjct: 112 --KRPNTVRHGVNTITRLVETRRAQLVLIAH 140
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 128 bits (308), Expect = 4e-30
Identities = 58/98 (59%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Frame = +1
Query: 127 EVAAAPLVVKKVEP--KKIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKA 300
+VAA P ++ K++ NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A
Sbjct: 113 KVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSA 172
Query: 301 VLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 414
+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 173 ILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 107 bits (257), Expect = 6e-24
Identities = 49/80 (61%), Positives = 62/80 (77%), Gaps = 2/80 (2%)
Frame = +1
Query: 127 EVAAAPLVVKKVEP--KKIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKA 300
+VAA P ++ K++ NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A
Sbjct: 113 KVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSA 172
Query: 301 VLQRRLKVPPPINQFTQTLD 360
+LQ+RLKVPP INQF LD
Sbjct: 173 ILQKRLKVPPTINQFRTALD 192
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 222 PGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 392
P A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+
Sbjct: 64 PAQEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDV 120
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 222 PGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 392
P A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+
Sbjct: 101 PAQEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 222 PGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 392
P A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+
Sbjct: 101 PAQEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 222 PGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 392
P A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+
Sbjct: 101 PAQEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -2
Query: 242 LVGWMSWPIAKF--FVLFSNRGFTIF 171
LVGW +W I F +L SNR F +F
Sbjct: 97 LVGWFAWCIGPFSQVLLTSNRIFAVF 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,664,666
Number of Sequences: 27780
Number of extensions: 211595
Number of successful extensions: 511
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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