Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B23
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   2.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.6  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.4  

>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 84  FGFYE-CLFKELSVVTANTLMVK 19
           FG +E C+F++L  +  NTL V+
Sbjct: 52  FGCFEACVFQKLHFMDGNTLNVE 74


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 247 YFKKGEIVFLSAAIFCQYAMV 309
           Y K  EI FL   IF   AMV
Sbjct: 290 YIKASEIWFLGCTIFLFAAMV 310


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 78  FYECLFKELSVVTANTLMVK 19
           F  C+F++L  +  NTL V+
Sbjct: 55  FEACVFQKLHFMDGNTLNVE 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,983
Number of Sequences: 438
Number of extensions: 1719
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)