Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B22
         (154 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81124-7|CAB03376.1|  334|Caenorhabditis elegans Hypothetical pr...    28   0.78 
U23521-2|AAC46815.2|  316|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U23521-1|ABD63220.1|  348|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AF026215-1|AAB71319.1|  352|Caenorhabditis elegans Serpentine re...    27   2.4  
Z82287-4|CAB05314.1|  433|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81124-5|CAB03374.1|  328|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Y08816-1|CAA70050.2|  433|Caenorhabditis elegans TFIIE-alpha pro...    26   4.2  
AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical ...    25   7.3  

>Z81124-7|CAB03376.1|  334|Caenorhabditis elegans Hypothetical
           protein T21B4.9 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 95  VEALVEGLQIVLFEAWFIYFLYVSSRT 15
           +  LV GLQ++ F +  IY+L +S  T
Sbjct: 216 ITRLVSGLQVIFFSSCCIYYLCISKTT 242


>U23521-2|AAC46815.2|  316|Caenorhabditis elegans Hypothetical
           protein F41C3.8a protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 119 CSVVEQLFVEALVEGLQIVLFEAWFIYFLYVSSRTTAPR 3
           C++   + +  +VEG+  ++   + IYFL  + R TA R
Sbjct: 179 CAIQPMIPIWLIVEGVLFIISATFRIYFLIPTPRRTAYR 217


>U23521-1|ABD63220.1|  348|Caenorhabditis elegans Hypothetical
           protein F41C3.8b protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 119 CSVVEQLFVEALVEGLQIVLFEAWFIYFLYVSSRTTAPR 3
           C++   + +  +VEG+  ++   + IYFL  + R TA R
Sbjct: 211 CAIQPMIPIWLIVEGVLFIISATFRIYFLIPTPRRTAYR 249


>AF026215-1|AAB71319.1|  352|Caenorhabditis elegans Serpentine
           receptor, class h protein83 protein.
          Length = 352

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 95  VEALVEGLQIVLFEAWFIYFLYVSSRTTAPR 3
           +  L E  QIV F A  +Y+L+VS R+ A +
Sbjct: 210 IGVLTEIAQIVFFLACCVYYLFVSVRSFASK 240


>Z82287-4|CAB05314.1|  433|Caenorhabditis elegans Hypothetical
           protein ZK550.4 protein.
          Length = 433

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 149 EMMEVHEQAHCSVVEQLF 96
           EM E+ ++++CSVV+ LF
Sbjct: 405 EMSELEKESYCSVVQDLF 422


>Z81124-5|CAB03374.1|  328|Caenorhabditis elegans Hypothetical
           protein T21B4.7 protein.
          Length = 328

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 86  LVEGLQIVLFEAWFIYFLYVSS 21
           L  GLQ++ F +  IY+L+V S
Sbjct: 214 LATGLQVLFFSSCCIYYLFVKS 235


>Y08816-1|CAA70050.2|  433|Caenorhabditis elegans TFIIE-alpha
           protein protein.
          Length = 433

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 149 EMMEVHEQAHCSVVEQLF 96
           EM E+ ++++CSVV+ LF
Sbjct: 405 EMSELEKESYCSVVQDLF 422


>AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical
           protein K12B6.2 protein.
          Length = 597

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 101 LFVEALVEGLQIVLFEAWFIYFLYVSSR 18
           L+ +++V G+   +F+A+FIYF+Y   R
Sbjct: 363 LYFKSIV-GVSKQIFQAFFIYFVYTIFR 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,434
Number of Sequences: 27780
Number of extensions: 22389
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)