Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B22
         (154 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   1.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   1.8  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    19   7.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    18   9.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    18   9.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 122 HCSVVEQLFVEALVEGLQIVLFEAWFI 42
           + S   Q+ + A +  LQIVL   W I
Sbjct: 621 YISPASQVCIAAALIALQIVLTLVWMI 647


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 122 HCSVVEQLFVEALVEGLQIVLFEAWFI 42
           + S   Q+ + A +  LQIVL   W I
Sbjct: 711 YISPASQVCIAAALIALQIVLTLVWMI 737


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -3

Query: 134 HEQAHCSVVE 105
           H+Q HC+  E
Sbjct: 1   HQQFHCAAAE 10


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 15  CSRRYV*KVNKPCLEED 65
           C RR+  + N  CL+ D
Sbjct: 277 CQRRFEEQGNYSCLKVD 293


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/13 (46%), Positives = 6/13 (46%)
 Frame = +1

Query: 115 EQCACSCTSIISC 153
           E   CSC   I C
Sbjct: 81  EGMQCSCNKCIGC 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,685
Number of Sequences: 438
Number of extensions: 170
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2664060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)