Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B21
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    27   1.2  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    26   1.6  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   3.7  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    24   8.5  

>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
           Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 177 FILRMTTISSCRPKQ*IV 230
           FILR+ T+  C PKQ IV
Sbjct: 70  FILRVQTVEDCSPKQVIV 87


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 312 NLIYYLSYFVIIIMIIYEKFVVTQLNCEQFIVSADMRILLSF 187
           N I ++  FVI    IY   +   L  +Q++++ D+R L+S+
Sbjct: 33  NFIQFIEEFVIDNDFIYRTQLRDNLVVKQYMLNIDLRHLISY 74


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 142 LNTGVDWLFWIYYLITKN 89
           L +GV WL W  Y I KN
Sbjct: 30  LMSGVQWLAWGIYKINKN 47


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -3

Query: 352 FFIYNSNTTNDYY*PNILPLLFRXXXXXNI*EIRSHTI 239
           +FIY     NDY  PN L  L        +   R+H I
Sbjct: 170 YFIYGPWHANDYIKPNHLLFLIVGWAFAVLSNFRTHII 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,631
Number of Sequences: 5004
Number of extensions: 20907
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)