Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B21
         (366 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82278-10|CAC15860.2|  390|Caenorhabditis elegans Hypothetical p...    27   3.1  
AL132943-14|CAC14395.2|  390|Caenorhabditis elegans Hypothetical...    27   3.1  
AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical ...    27   3.1  
U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm recept...    27   4.1  
AF125952-3|AAD14699.1|  475|Caenorhabditis elegans Hypothetical ...    27   4.1  
AC006722-9|ABP57813.1|  475|Caenorhabditis elegans Hypothetical ...    27   4.1  
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    27   5.4  
AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine r...    26   7.2  

>Z82278-10|CAC15860.2|  390|Caenorhabditis elegans Hypothetical
           protein Y116F11B.2 protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 153 LFIML*CIFILRMTTISSCRPKQ 221
           +F+ML CI +  + T+S C P Q
Sbjct: 3   VFLMLICIILFYVNTVSGCIPSQ 25


>AL132943-14|CAC14395.2|  390|Caenorhabditis elegans Hypothetical
           protein Y116F11B.2 protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 153 LFIML*CIFILRMTTISSCRPKQ 221
           +F+ML CI +  + T+S C P Q
Sbjct: 3   VFLMLICIILFYVNTVSGCIPSQ 25


>AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical
           protein Y39G8B.3 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 360 QFFFSFIIQ-TPQTIIINLIYYLSYFVIIIMIIYEKF 253
           +F F FI+  TP  + + LI +   + + I  I+EKF
Sbjct: 201 EFLFMFIVAATPNVLAVTLILFARQYNLKITRIHEKF 237


>U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm receptor
           protein 136 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 345 FIIQTPQTIIINLIYYLSYFVIIIMIIYEKFVVTQLNCEQF 223
           F++ T   + INL Y L  F++ +  +   FV + L+C+ F
Sbjct: 76  FVVFT-HNLSINLSYSLGEFLVCLHCVLTGFVASLLSCQFF 115


>AF125952-3|AAD14699.1|  475|Caenorhabditis elegans Hypothetical
           protein C01B4.7 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 348 SFIIQTPQTIIINLIYYLSYFVIIIMIIYEKFVVTQLNCEQF 223
           S I +TPQ  I N +++    V I+++      +TQ+N + F
Sbjct: 18  SDIFETPQRKISNFVFWNQTRVFILILSLTCMTLTQINSQIF 59


>AC006722-9|ABP57813.1|  475|Caenorhabditis elegans Hypothetical
           protein Y19D10A.4 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 348 SFIIQTPQTIIINLIYYLSYFVIIIMIIYEKFVVTQLNCEQF 223
           S I +TPQ  I N +++    V I+++      +TQ+N + F
Sbjct: 18  SDIFETPQRKISNFVFWNQTRVFILILSLTCMTLTQINSQIF 59


>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
           transmembrane conductanceregulator homolog protein 1
           protein.
          Length = 1247

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 327 QTIIINLIYYLSY--FVIIIMIIYEKFVVTQLNCEQFIVSADMRILLS 190
           +TII+ LI  L Y  F II   +Y+K +  QL C    V  +  +L S
Sbjct: 227 RTIIVVLIVALVYAVFNIIDSYVYKKSLKVQLKCRDERVEFEKTVLNS 274


>AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine
           receptor, class j protein37 protein.
          Length = 333

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 144 SIYLFIML*CIFILRMTTISSCRPKQ 221
           SI +F+ML C+ + ++  +SSC  K+
Sbjct: 211 SICMFLMLACMIMKKLNKMSSCMSKK 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,876,828
Number of Sequences: 27780
Number of extensions: 112879
Number of successful extensions: 245
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)