Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B19
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647...    29   3.5  
02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032     27   8.2  

>06_01_0850 -
           6472213-6473541,6474229-6474282,6474616-6474671,
           6474824-6476012
          Length = 875

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 377 AKIYYRSSTIGINMLTWLPIY 315
           AKI +RSS++  N+  WLP++
Sbjct: 622 AKIPFRSSSLATNLAFWLPVF 642


>02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032
          Length = 209

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = +1

Query: 1   ARGLNNKCPIKSNVSAYSLRRLQIKKNNLEY**KTHVAISNHLSLTIWQNKKMTQ 165
           A  +  +C + S+ ++  LR+L++KK  +    +  V     + L+ W ++KM++
Sbjct: 18  ATKIRKRCALSSSGASDPLRKLRLKKRGVVVLGRRGVGGGGGVVLSPWSSRKMSE 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,636,026
Number of Sequences: 37544
Number of extensions: 200063
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)