Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B17
         (121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    23   5.6  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    23   7.4  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    23   7.4  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        22   9.8  

>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 14  SCNGPAGMGECTHFSTPP 67
           S N P G+GE    S PP
Sbjct: 551 SSNAPVGLGEVESKSVPP 568


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 30  RGWGSVHTSQPHLFARLPXE 89
           RG  S+H    HL  RLP +
Sbjct: 150 RGGSSIHVLIQHLIRRLPGD 169


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 109 LTCLGHASYGR 77
           L C+GH S+GR
Sbjct: 7   LECIGHGSFGR 17


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 47  THFSTPPFRPPPVXGMT*AGQP 112
           +H   PP  PPP  G    G P
Sbjct: 75  SHAYAPPSGPPPNTGANSYGNP 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,195
Number of Sequences: 5004
Number of extensions: 7808
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 20
effective length of database: 2,262,398
effective search space used: 42985562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)