Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B17
(121 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1204 + 35402747-35404705 27 2.1
10_03_0036 - 7286425-7286463,7286686-7286974,7287306-7288192,728... 26 4.9
09_01_0133 - 1998528-1998566,1998672-1998710,1998796-1998946,199... 26 4.9
03_01_0648 - 4749150-4749275,4749902-4749986,4750761-4750861,475... 26 4.9
03_01_0456 - 3495537-3496205,3496304-3496364,3496447-3496829,349... 26 4.9
01_01_0715 - 5542648-5543219,5543352-5543544 26 4.9
12_02_0454 + 19199063-19200757,19202201-19202287 25 6.5
11_04_0041 - 12690287-12690816,12691087-12691378 25 6.5
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816... 25 6.5
12_01_0973 - 9803378-9803724,9804057-9804163,9804208-9804443,980... 25 8.6
11_03_0217 - 11828305-11828343,11828449-11828487,11828573-118288... 25 8.6
08_02_1258 - 25670092-25670152,25671124-25671327,25671400-256716... 25 8.6
07_03_1298 - 25592788-25592890,25593126-25593229,25593747-255938... 25 8.6
>01_06_1204 + 35402747-35404705
Length = 652
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 8 ASSCNGPAGMGECTHFSTPPFRPPPVXGMT*AGQPA 115
A + G AG GE + ++PP PPP A PA
Sbjct: 57 AVAAAGGAGAGEHSVPASPPMPPPPAVPPAVAAMPA 92
>10_03_0036 -
7286425-7286463,7286686-7286974,7287306-7288192,
7288280-7288726,7288805-7288830,7288984-7289512
Length = 738
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 1 ARGLVVQWPSGDGGVYTLLNPTFSPASR 84
ARG +QWP + PT +P SR
Sbjct: 407 ARGTFIQWPKDLIEIRVTARPTTAPGSR 434
>09_01_0133 -
1998528-1998566,1998672-1998710,1998796-1998946,
1999185-1999337,1999416-2000302,2000390-2000836,
2000915-2001190,2001215-2001622
Length = 799
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 1 ARGLVVQWPSGDGGVYTLLNPTFSPASR 84
ARG +QWP + PT +P SR
Sbjct: 450 ARGTFIQWPKDLIEIRVTARPTTAPGSR 477
>03_01_0648 -
4749150-4749275,4749902-4749986,4750761-4750861,
4750933-4751191,4751382-4751434,4752828-4752990,
4753181-4754616
Length = 740
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 81 GGGRKGGVEKCVHSPIPAGPLHDEAS 4
GGG++GG +H P+ G AS
Sbjct: 85 GGGQQGGARGAIHVPLSGGFASSPAS 110
>03_01_0456 -
3495537-3496205,3496304-3496364,3496447-3496829,
3496924-3497613
Length = 600
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 84 TGGGRKGGVEKCVHSPIPAGPLHDEAS 4
TGGG GG H P P+ P D ++
Sbjct: 15 TGGGGDGGDMSFQHYPPPSNPYSDSSA 41
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 56 STPPFRPPPVXGMT*AGQPAGG 121
S PP PPP G A PAGG
Sbjct: 187 SPPPPPPPPAGGNFTAPSPAGG 208
>12_02_0454 + 19199063-19200757,19202201-19202287
Length = 593
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 90 PXTGGGRKGGVEKCVHSPIP 31
P +G GR GGV SP+P
Sbjct: 88 PSSGPGRGGGVASASASPVP 107
>11_04_0041 - 12690287-12690816,12691087-12691378
Length = 273
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 100 LGHASYGRRAKRWG*EVCTLPHPRW 26
LGH+ YG +AK+ + +PHP +
Sbjct: 56 LGHSLYGWKAKKITFPMVFVPHPNY 80
>06_03_1303 +
29180837-29181205,29181289-29181306,29181337-29181622,
29185008-29186284,29186499-29187005
Length = 818
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 81 GGGRKGGVEKCVHSPIPA 28
GGGR GGV++ SP PA
Sbjct: 431 GGGRGGGVQQQDASPAPA 448
>12_01_0973 -
9803378-9803724,9804057-9804163,9804208-9804443,
9804513-9804799,9806226-9806331
Length = 360
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 119 PRLADLPRSCLXREAGEKVGLRSVYTPPSPLGHCT 15
P+L L S REA +GL Y S L H T
Sbjct: 259 PKLQRLCFSLYAREAASNLGLEQSYVHLSSLQHLT 293
>11_03_0217 -
11828305-11828343,11828449-11828487,11828573-11828861,
11828944-11829114,11829193-11830079,11830167-11830346,
11830692-11831399
Length = 770
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 1 ARGLVVQWPSGDGGVYTLLNPTFSPASR 84
ARG +QWP + PT +P R
Sbjct: 369 ARGTFIQWPKDLIEIRVTARPTIAPGGR 396
>08_02_1258 -
25670092-25670152,25671124-25671327,25671400-25671611,
25671701-25671749,25671833-25672612,25672696-25672767,
25672907-25672954,25673053-25673127,25673238-25673312,
25673614-25673668,25673931-25674016,25674759-25674988
Length = 648
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 117 PAG*PA*VMPXTGGGRKGGVEKCVHSPIPAGPLHD 13
P G P P GG GG + +P+P +HD
Sbjct: 589 PTGGPRPRRPGRGGLPMGGPSPILAAPLPPPHMHD 623
>07_03_1298 -
25592788-25592890,25593126-25593229,25593747-25593808,
25593957-25594065,25594215-25594355,25594707-25594769,
25594974-25595084,25596140-25596457
Length = 336
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -2
Query: 81 GGGRKGGVEKCVHSPIPAGPL 19
G GR GG+ KC +P L
Sbjct: 114 GNGRDGGIGKCADDAVPGWSL 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.136 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,307,044
Number of Sequences: 37544
Number of extensions: 100945
Number of successful extensions: 421
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 20
effective length of database: 14,042,468
effective search space used: 266806892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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