Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B17
         (121 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   1.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.2  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              19   4.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             18   9.7  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 115 GWLTCLGHASYGRRAKRW 62
           GWL     ++YG   +RW
Sbjct: 234 GWLAFNSGSTYGVSGQRW 251


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 78  GGRKGGVEKCVHSPIPAGPLHDE 10
           G R GG       P+P  PLH E
Sbjct: 427 GARFGGSCLIHGPPLPPLPLHTE 449


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 78  GGRKGGVEKCVHSPIPAGPLHDE 10
           G R GG       P+P  PLH E
Sbjct: 427 GARFGGSCLIHGPPLPPLPLHTE 449


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 35 SPLGHCTTRP 6
          SP  HC TRP
Sbjct: 17 SPSVHCGTRP 26


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 77  PPVXGMT*AGQPA 115
           PP  G   AGQP+
Sbjct: 529 PPAKGAAAAGQPS 541



 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 43  VYTLLNPTFSPA 78
           +YT+ NP F  A
Sbjct: 676 IYTVFNPEFRKA 687


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 56   RSVYTPPSP 30
            R  YTPP P
Sbjct: 994  RGRYTPPQP 1002


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,280
Number of Sequences: 438
Number of extensions: 1052
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 20
effective length of database: 137,583
effective search space used:  2614077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)