Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B16
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   224   4e-59
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   221   3e-58
07_03_0771 - 21381276-21381461,21381583-21381733,21381823-213820...    28   5.0  
04_04_0157 + 23165638-23166633                                         28   5.0  
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386...    27   8.7  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  224 bits (548), Expect = 4e-59
 Identities = 105/184 (57%), Positives = 129/184 (70%)
 Frame = +3

Query: 48  ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKX 227
           A   G    L+ +E+DV  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK 
Sbjct: 3   AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62

Query: 228 XXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFRE 407
                     E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F E
Sbjct: 63  QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 122

Query: 408 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 587
           PRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLL
Sbjct: 123 PRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLL 182

Query: 588 AREV 599
           AR V
Sbjct: 183 ARMV 186


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  221 bits (541), Expect = 3e-58
 Identities = 106/182 (58%), Positives = 128/182 (70%), Gaps = 2/182 (1%)
 Frame = +3

Query: 60  GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 233
           GG    ALS  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK   
Sbjct: 5   GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64

Query: 234 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 413
                   E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPR
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124

Query: 414 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 593
           LLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR
Sbjct: 125 LLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLAR 184

Query: 594 EV 599
            V
Sbjct: 185 MV 186


>07_03_0771 -
           21381276-21381461,21381583-21381733,21381823-21382060,
           21382161-21382368,21382650-21382777,21382892-21383029,
           21383160-21384012
          Length = 633

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 488 YYWNVDI*SFSNWLMILSRVQNNQQPWFAECGLDLVSKCTRSETSSN 348
           Y    D+ SF   ++ +   Q N  P+FAE   DLVS   R  T  N
Sbjct: 535 YSTKSDVFSFGILILEIVTGQRNSGPYFAEQNEDLVSLVWRHWTEGN 581


>04_04_0157 + 23165638-23166633
          Length = 331

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 223 FSHVRRRLITCVPSPRRL 170
           FSH+RRRL+  +P+P  L
Sbjct: 5   FSHLRRRLLAAIPNPNLL 22


>03_02_0792 +
           11236785-11237337,11237711-11238261,11238446-11238628,
           11238768-11238966,11239055-11239761
          Length = 730

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 330 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 503
           HT +T    R TP AF +   AA  E R+ +  +   ++      EA Y +I V  + + 
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329

Query: 504 DSPLR 518
           + P++
Sbjct: 330 EQPMQ 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,436,532
Number of Sequences: 37544
Number of extensions: 325823
Number of successful extensions: 738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)