Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B15
(443 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 28 0.74
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 28 0.74
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.74
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 27 0.98
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 27 1.3
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 27 1.3
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 27 1.7
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 26 3.0
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 4.0
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 5.2
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 6.9
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 25 6.9
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 25 6.9
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 24 9.1
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 24 9.1
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 24 9.1
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 24 9.1
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 24 9.1
SPBC1685.12c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 24 9.1
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 24 9.1
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 27.9 bits (59), Expect = 0.74
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 181 DSPWTAIYDMEAMFPDKKQHQEQTSAPDDNDISKVKVDVEQLRSLTEL 324
DS W A+ D A PD+ H+ P +K ++++ LR EL
Sbjct: 395 DSRWDALQDTLASIPDELYHETVVDMPTKQVSNKERLEI--LREQEEL 440
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 0.74
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 226 DKKQHQEQTSAPDDNDISKVKVDVEQLRSLTELGIDMEFLNDIEDEITASQHD 384
DK+ + ++ A D D SKVK V+ + +T+ G+D F D +T Q +
Sbjct: 229 DKEVYAKKFGATDFIDSSKVKDLVQYVIDVTDGGVDYAF--DCTGNVTVMQQE 279
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 27.9 bits (59), Expect = 0.74
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 232 SCRGTWLPCRRWLSRASPTRTGVFPYY 152
S R TWLPC +S +SP+ F Y
Sbjct: 151 SQRSTWLPCSAAVSTSSPSSDPFFDSY 177
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 27.5 bits (58), Expect = 0.98
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 229 KKQHQEQTSAPDDNDISKVKVDVEQLRSLTELGIDMEFLNDIEDEITASQHDY 387
+++ +E+T DDND+ + + L E D L +ED+I + +
Sbjct: 132 REEQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLEDDIEGQEFSF 184
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 58 SYAPSYDGTFATLTKEESHLIYHTLPSESGQSNTEILRFASDSP 189
++ PS D LTK+ S L ++ PS SN + L+F S P
Sbjct: 32 AFDPSVDNE-PLLTKKLSSLSIYSEPSPDEASNLQELKFVSSPP 74
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 37 INYGPFSSYAPSYDGTFATLTKEESHLIYHTLPS 138
+N G F +Y DG+ T ++ +++ LPS
Sbjct: 161 VNIGAFRTYPVGNDGSIRTKSRHHPSVLFKNLPS 194
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 26.6 bits (56), Expect = 1.7
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = +1
Query: 139 ESGQSNTEILRFASDSPWTAIYDMEAMFPDKKQHQEQTSAPDDNDISKVKVDVEQLRSLT 318
+SG EI + + D E + +KKQ E+ + +++ + V L S
Sbjct: 225 QSGNDEEEIFSWGDERSDEEESDNEQVNDEKKQSSEEDTTENNSAAEVIDETVNDLESAV 284
Query: 319 ELGIDME 339
G+ +E
Sbjct: 285 SKGLQIE 291
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 140 SDGKVWYMRCDSSLVRVAKVPS*EGAYEL 54
SDG+V+++R D L + +PS E E+
Sbjct: 548 SDGRVFFLRQDDKLSTLESLPSREAQEEI 576
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 4.0
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Frame = +1
Query: 16 IAKGVKPINYGPFS--SYAPSYD-GTFATLTKEESHLIYHTLP---SESGQSNTEILRFA 177
I+ V P N P S S ++ +F KE++ +Y T P + S S TE+
Sbjct: 441 ISSSVSPSNVIPNSLTSSVSNFSVSSFLNNLKEDTEWLY-TFPIGCNISFYSTTEMRSLR 499
Query: 178 SDSPWTAIYDMEAMFPDKKQHQEQTSAPDDNDISKVKVDVEQLRSLTELGIDMEFLNDIE 357
S PW + P K H+ Q + + +K+ + + Q L + + E + +
Sbjct: 500 S--PWENLMREHQFEPTAKMHELQMMGVLEAESAKISIPLLQSDPLLKGSVFSEEVQEDY 557
Query: 358 DE 363
DE
Sbjct: 558 DE 559
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 286 SLSIYHYHRVLRFVLDVVSCRGTWLPCRRWLSR 188
S+ Y+Y+ + ++ VVS G+ + R+ L R
Sbjct: 346 SMDSYYYYAICILIISVVSILGSLIETRKTLRR 378
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 24.6 bits (51), Expect = 6.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 244 EQTSAPDDNDISKVKVDV 297
E+T APD+ND+ K DV
Sbjct: 1030 EETKAPDNNDLHKRLSDV 1047
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 24.6 bits (51), Expect = 6.9
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 15 YSQGSETHQLWAV--QFVRALLRRDLRDPHQGGVTPHIPYFAIRK 143
Y Q ++ W +F +ALL+ D+ DP+ G I +A+R+
Sbjct: 358 YLQSLQSRGCWRTVFEFCKALLQFDMSDPYAIGTC--IDIYALRR 400
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 24.6 bits (51), Expect = 6.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 127 TLPSESGQSNTEILRFASDSPWTAIYD 207
TL ESG+++ L + DS W +D
Sbjct: 85 TLHEESGENSDHPLNTSDDSKWKEYFD 111
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 280 SIYHYHRVLRFVLD 239
+IY+ HR+LR VLD
Sbjct: 305 AIYNTHRILRLVLD 318
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.2 bits (50), Expect = 9.1
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +1
Query: 88 ATLTKEESHLIYHTLPSESGQSNTEILRFASDSPWTAIYDMEAMFPDKKQHQEQTSAPDD 267
A+LT+ + ++Y L + QSN+ D+ T + + PDKK ++
Sbjct: 305 ASLTQAVT-VVYERLRASHTQSNSTSALPEEDASVTENWVHDEDEPDKKITLHSMASAGT 363
Query: 268 NDISKVKVDVE 300
+ + VKVD +
Sbjct: 364 SSLDHVKVDAD 374
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 24.2 bits (50), Expect = 9.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 265 DNDISKVKVDVEQLRSLTELGIDMEFLNDIEDEITASQHDYGISAALR 408
DN IS + ++ L L LGI+ L D+ G+ AALR
Sbjct: 236 DNMISVIPAELGTLFQLKILGIEGNPLQDVYKNQIMESGTAGLIAALR 283
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 222 EHGFHVVDGCPGRV 181
++G HVV G PGRV
Sbjct: 137 DYGQHVVSGTPGRV 150
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 226 DKKQHQEQTSAPDDNDISKVKVDV 297
+KK E+TS DD+ ++ K DV
Sbjct: 491 EKKLKTEETSKTDDSPVTDAKPDV 514
>SPBC1685.12c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 117
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 208 MEAMFPDKKQHQEQTSAPDDNDISKVKVD 294
+E++ PD+K+H + + D +IS + VD
Sbjct: 19 VESLLPDEKRHSQTLTYADPRNIS-ITVD 46
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 24.2 bits (50), Expect = 9.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 276 IESESGRGTAQVSNRARHRHGVPERYRR*DHGVPTRLRDLGGAPPHSR 419
IESE ++ S+ A ++ +RYRR G +R R +P + R
Sbjct: 719 IESEDKGYRSRSSSPASRKYRSRQRYRRSYAGSTSRGRSFSRSPSYRR 766
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.130 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,806
Number of Sequences: 5004
Number of extensions: 38067
Number of successful extensions: 107
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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