Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B15
(443 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 33 0.078
11_06_0344 + 22540436-22540737,22541304-22543545 31 0.31
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942... 29 2.2
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317... 29 2.2
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 28 2.9
02_03_0262 + 17015383-17015619,17017932-17018879 28 3.9
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 27 5.1
02_01_0434 + 3158637-3159319,3159460-3159576,3160064-3160226,316... 27 5.1
09_04_0721 + 19725695-19725697,19725793-19725859,19725944-197260... 27 6.8
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550... 27 6.8
03_01_0009 - 89127-89924,90090-90518,90582-90716,91102-91382,916... 27 6.8
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540... 27 9.0
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 27 9.0
04_04_0505 + 25719959-25720052,25721548-25722266 27 9.0
04_03_0252 - 13517763-13517861,13518845-13519315,13519400-135196... 27 9.0
>03_02_0199 -
6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 33.5 bits (73), Expect = 0.078
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Frame = +1
Query: 220 FPDKKQHQ-EQTSAPDDNDISKVKVDVEQLRSLTELGIDM-----EFLNDIEDEITASQH 381
FP K H+ E TS IS++ + VE+ RSL + G+D E + +DE+ + +
Sbjct: 355 FPAKDDHEDEDTSNSKMKKISRLALIVEEERSLCDEGVDQQTTPHESDSSKKDEVAGADN 414
Query: 382 DYGISAALRHTHELIFK 432
D I+ +L +T EL+ K
Sbjct: 415 DIKIT-SLINTAELLKK 430
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 31.5 bits (68), Expect = 0.31
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +1
Query: 133 PSESGQSNTEILRFASDSPWTAIYDMEAMFPDKKQHQEQTSAPDDNDISKVKVDVEQLRS 312
P+ SG+ + EILR +P I M + KQ QE+ ++ D S V +D+ +
Sbjct: 179 PANSGRVSNEILRVCDGTP-LLIIAMAGLV--SKQMQEEDYDDEEGDQSGVTMDISRPCV 235
Query: 313 LTELGIDMEFLNDIEDEITAS 375
L + L +ED ++ S
Sbjct: 236 AAYLPSGIRELKQVEDTLSPS 256
>03_05_0052 -
20293197-20293310,20293938-20294024,20294133-20294270,
20295009-20295128,20295236-20295343,20296053-20296133,
20296216-20296456,20297010-20297305
Length = 394
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -3
Query: 222 EHGFHVVDGCPGRV 181
EHG HVV G PGRV
Sbjct: 147 EHGVHVVSGTPGRV 160
>01_06_0020 +
25630728-25631023,25631308-25631548,25631629-25631709,
25632109-25632216,25632329-25632448,25632806-25632943,
25633064-25633150,25633802-25633915
Length = 394
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -3
Query: 222 EHGFHVVDGCPGRV 181
EHG HVV G PGRV
Sbjct: 147 EHGVHVVSGTPGRV 160
>01_01_0588 +
4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 122 TILCHQKVDRVIRKYSGSRRTRPG--QPSTTWKPCSPTRNNIKNKP 253
T CH+ V +++ Y S R PG +P K CS N + + P
Sbjct: 434 TFCCHRSVQQLV--YDFSERDNPGVVRPRKRRKHCSSNENQVDSWP 477
>02_03_0262 + 17015383-17015619,17017932-17018879
Length = 394
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 230 LSGNMASMS*MAVQGESDANRSISVLLCPLSDGKVWYMR 114
+ G M S M V DA++ V C +DGK W+ R
Sbjct: 146 MKGKMNESS-MVVMEMQDADKQAGVWYCNKNDGKKWHCR 183
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 157 TEILRFASDSPWTAIYDMEAMFPDKKQHQEQTSAPDDNDISK 282
T L+ +D WT + DM + KKQ + + S P D+ K
Sbjct: 498 TSPLKCMTDEQWTKLVDMWSSPEHKKQEKYKDSEPTAIDLFK 539
>02_01_0434 +
3158637-3159319,3159460-3159576,3160064-3160226,
3160394-3160600
Length = 389
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 167 SGSRRTRPGQPSTTWKPCSPTRNNIKNKPQHPMIMI 274
+G R+ P T +P SPT K KP H +M+
Sbjct: 185 AGRERSPSPSPVFTTRPMSPTPPMQKLKPAHTTVMV 220
>09_04_0721 +
19725695-19725697,19725793-19725859,19725944-19726044,
19726780-19726824,19727052-19727522,19727972-19728142
Length = 285
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 128 LCHQKVDRVIRKYSGSRRTRPGQPSTT 208
+CH+ R RK SGSR G +TT
Sbjct: 174 ICHETSSRRSRKLSGSRAWERGNETTT 200
>09_04_0501 +
18153252-18153453,18153973-18154224,18154809-18155015,
18155198-18157046,18157334-18157381,18158222-18158291,
18158380-18158475,18158583-18158621,18158714-18158924,
18159037-18159178,18159275-18159407,18159762-18159878
Length = 1121
Score = 27.1 bits (57), Expect = 6.8
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 417 VSVAERRRDPVVVLGRRDLIFYIVQELHVYAELC*RPELFHVH-FHFRYII 268
V VAERRR+ GRR + E+ +Y+ C RP H+H H R ++
Sbjct: 223 VCVAERRREGRGEEGRRRSRELMEMEMEMYSR-CARPS--HIHQLHARLVV 270
>03_01_0009 -
89127-89924,90090-90518,90582-90716,91102-91382,
91634-91809,91899-92011,92157-92278,92375-92594
Length = 757
Score = 27.1 bits (57), Expect = 6.8
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Frame = +1
Query: 103 EESHLIYHTLPSESGQSNTEILRFASDSPWTAIYDMEAMFPDKKQHQEQTSAPDDNDISK 282
+ L+ LPSE+ ++++ R S + + + +++PDK + ++ + + S+
Sbjct: 223 DSPRLLGSNLPSENPKNSSPAHRNRSLTLYDYLNGSTSIYPDKDRRVNSSTGTESSKPSE 282
Query: 283 VKVDVEQLRSLTELGIDMEFLNDIEDEITASQHDYGISAAL-RHTHELI 426
+K E LR + L L+D +D I+ + L + H+L+
Sbjct: 283 LKGSNEVLRQESLL---QGMLSDNKDHISTELEKLRLELRLIQGKHKLV 328
>06_01_0733 +
5405889-5405922,5405923-5405975,5406430-5406543,
5407464-5407523,5408139-5408217,5410661-5410728,
5411198-5411302,5411887-5411994,5412087-5412279,
5412818-5412897,5413309-5413536,5414112-5414252,
5414341-5414466,5414561-5414611,5414879-5414956,
5415814-5415960,5416685-5417179
Length = 719
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 268 NDISKVKVDVEQLRSLTELGIDMEFLNDIEDEITASQHDYGISAAL 405
N+I ++K ++EQLR G +E + + ++ D+G+ A L
Sbjct: 220 NEIRQLKEELEQLRRSIRTGTPIEDTMQKKHHLLETKGDFGLIALL 265
>05_03_0653 +
16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 418 RECGGAPPRSRSRVGTP*SHLLYRSGTPCLCRALLET 308
R G P + + TP + LL SG CLCR L T
Sbjct: 353 RAWAGVLPFTDILILTPDNDLLLYSGKQCLCRYTLPT 389
>04_04_0505 + 25719959-25720052,25721548-25722266
Length = 270
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 200 MAVQGESDANRSISVLLCPLSDGKVWYMRCDSSLVRVAKVP 78
MA + + + + V L L+ G WY+RC SLV A P
Sbjct: 211 MATEKRDEGDVKLEVRLISLNYG--WYVRCTPSLVGGAASP 249
>04_03_0252 -
13517763-13517861,13518845-13519315,13519400-13519679,
13519747-13519829
Length = 310
Score = 26.6 bits (56), Expect = 9.0
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 1 ARGRNIAKGVKPINYGPFSSYAPSYDGTFATLTKEESHLIYHTLPSESGQSNTEILRFAS 180
A + + + V + +S AP+ FA L +E H H PS S + ++ R S
Sbjct: 140 AEEQQMLREVAALESAAAASAAPAAANPFAGLGADEEHEYGHHHPSSSSERTKKVKRALS 199
Query: 181 DS 186
S
Sbjct: 200 VS 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.130 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,977,982
Number of Sequences: 37544
Number of extensions: 279648
Number of successful extensions: 597
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -