Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B14
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    26   2.2  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   3.0  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   6.8  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   6.8  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   6.8  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    25   6.8  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   9.0  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    24   9.0  

>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 159 KRLGDKYNSTHVGMDMG*CCGATDSGRALWNWGGSVTRPWLLT 287
           KR+ D  N T   +    C    D    +WNWG ++   W ++
Sbjct: 173 KRMSDALNKTGRPIFYSLCQWGEDF---VWNWGNTIANSWRIS 212


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 293 KKLKFSTLRGSFSESGISEFLRGLSIRSRADCAGKR 400
           KK  F+T  G F  +GI E  + L + +   C+ K+
Sbjct: 366 KKSSFNTSLGEFISNGIYEARKALGLLTPIGCSPKK 401


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 192 HVCCCIYHPDVSIWRCSRCDRPRYNVEYAVRSRPHIGVSHCKL 64
           H  C I  P++S    SR D  R N+    +SR  +    CKL
Sbjct: 271 HTICAIAIPEISFHDTSRLDLVR-NIASIPKSRWKLVCCICKL 312


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 261 NPPSSKALVQSRLRRSISPYPSPHV 187
           NPP + A  Q +  R  SP P+ H+
Sbjct: 179 NPPFASAQTQGQEHRPSSPNPAEHM 203


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 375 DRIERPLRNSLMPLSEKDPLRVENLSFFALSTAMAG*PNPPSSKA--LVQSRLRRSISP 205
           DR +  L+N + P+  +D     N  FF  +      PN  + +A  L+Q  + + + P
Sbjct: 441 DRPQSLLQNGIQPIIMRDGKLALNPEFFKNANGEQQAPNEQAVQAISLLQQHINKQLGP 499


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 317 RGSFSESGISEFLRGLSIRSRAD 385
           R S + SG +  + G+SI SRAD
Sbjct: 150 RASSTHSGTAPSIMGMSIHSRAD 172


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 189 VCCCIYHPDVSIWRCSRC 136
           VC    +P  SIW C  C
Sbjct: 199 VCTDTINPSTSIWSCGTC 216


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 238 RPESVAPQHQPISIPTCVLLYLS 170
           RP S +P   P+S+PT  L Y S
Sbjct: 254 RPASESPPLSPLSLPTDDLYYQS 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,755
Number of Sequences: 5004
Number of extensions: 41539
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)