Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B14
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 34 0.058
05_06_0174 - 26149663-26149885,26150353-26151701 33 0.13
12_01_0863 - 8179535-8179774,8180301-8180364,8180505-8180896 29 1.3
08_02_0650 - 19708479-19710507,19711033-19711889 29 1.3
02_01_0682 + 5064127-5065170,5066234-5066317 28 2.9
12_02_1160 + 26592537-26593046,26593588-26593635 28 3.8
11_06_0080 - 19880319-19880957,19881800-19881948,19882266-198835... 28 3.8
08_02_1462 + 27308792-27308924,27309711-27309778,27309854-273101... 28 3.8
02_05_0013 + 24975298-24975352,24975533-24976494,24976621-249771... 28 3.8
01_06_1620 + 38697960-38698131,38698532-38700732 28 3.8
10_08_0982 - 22025279-22027277,22030256-22030488,22031205-220313... 27 5.1
01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901 27 5.1
12_01_0103 - 801800-802283,804653-804763,804918-804997 27 6.7
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 27 6.7
12_01_0294 + 2230539-2230870,2232179-2232574,2232676-2232834,223... 27 8.8
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 27 8.8
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234 27 8.8
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 33.9 bits (74), Expect = 0.058
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Frame = +2
Query: 218 RRNRLWTSA-----LE----LGGFGYPAMAVDNAKKLKFSTLRGSF 328
R N +WT+A LE +GG+GYPAM N KK ++ LR +F
Sbjct: 329 RNNFVWTAAGKQADLEKQVGVGGYGYPAMVALNVKKGAYAPLRSAF 374
Score = 29.9 bits (64), Expect = 0.95
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 27 PEIIQVVEEETFKA-CSEKPLCVVSILPHILHCNAACRNDYI 149
PE+ ++ + + C+ +C VS LP IL A RN+++
Sbjct: 292 PEVSELTGPDAMEEKCASAAICFVSFLPDILDSKAEGRNNFV 333
>05_06_0174 - 26149663-26149885,26150353-26151701
Length = 523
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 311 WRT*VSSRCQQPWPGNRTPPVPKRSSRVGCAAASAHI 201
WR+ C PWPG PVP + V AAA H+
Sbjct: 46 WRSVGPDPCGSPWPGLECKPVP-AAGNVSSAAARLHV 81
>12_01_0863 - 8179535-8179774,8180301-8180364,8180505-8180896
Length = 231
Score = 29.5 bits (63), Expect = 1.3
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 200 GYGLMLRRNRLWTSALELGGFGYPAMAVDNAKKLKFSTLRGSF-SESGISEFLRGLSIRS 376
G G M RR LW +A G G + + + +T+RGS S+ G + G + R
Sbjct: 7 GSGGMQRRRSLWQAAEAASGAGGDSTRIRPVPSTRATTVRGSVDSDCGTGGSVAG-NRRE 65
Query: 377 RADCAGKRR 403
AG RR
Sbjct: 66 GRSVAGDRR 74
>08_02_0650 - 19708479-19710507,19711033-19711889
Length = 961
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 27 PEIIQVVEEETFKACSEKPLCVVSILPHILHCNAACRNDYISILKRLG 170
P ++ V ++ K C PL +VSI +L C + +++ +L G
Sbjct: 365 PPELEEVADDILKKCDGLPLAIVSI-ASLLSCKPVTKQEWVWVLNSFG 411
>02_01_0682 + 5064127-5065170,5066234-5066317
Length = 375
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 320 GSFSESGISEF-LRGLSIRSRADCAGKRRRNAQDHHD 427
G F G+ EF + G S+R +D + R D HD
Sbjct: 48 GPFGGGGVEEFCVSGFSVRDLSDASSSGARETGDPHD 84
>12_02_1160 + 26592537-26593046,26593588-26593635
Length = 185
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 193 WGWIWADAAAQPTLD 237
WGW WA AAA P D
Sbjct: 127 WGWTWATAAALPHPD 141
>11_06_0080 -
19880319-19880957,19881800-19881948,19882266-19883589,
19883766-19883953,19884034-19884499
Length = 921
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 224 NRLWTSALELGGFGYPAMAVDNAKKLKFSTLRGSFSESGISEFLRGL 364
++ W A+++ +A NA+++ LR +F++SGISE+L L
Sbjct: 614 DKAWVLAIDMRNSTLQGVAEFNAERV--IALRYAFTQSGISEYLNML 658
>08_02_1462 +
27308792-27308924,27309711-27309778,27309854-27310159,
27310168-27310839
Length = 392
Score = 27.9 bits (59), Expect = 3.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 168 PDVSIWRCSRCDRPRYNV 115
P +S WRC C RYN+
Sbjct: 110 PGISCWRCRHCKGGRYNL 127
>02_05_0013 +
24975298-24975352,24975533-24976494,24976621-24977136,
24977250-24977442,24978108-24978439
Length = 685
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 283 NSHGRVTEPPQFQSARPESVAPQHQPI--SIPTCVLLYLSPRRFNMEM*SLRQ 131
+S +VTE P Q+ A HQP SI + +++PR N+E S+ Q
Sbjct: 417 SSFAQVTEQPNMQANTSTCQAVTHQPPDGSIHSVRTEFINPRASNIESYSVNQ 469
>01_06_1620 + 38697960-38698131,38698532-38700732
Length = 790
Score = 27.9 bits (59), Expect = 3.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 169 VINTTAHMWGWIWADAA 219
VI+ + H W+WADAA
Sbjct: 272 VIDVSGHFQAWVWADAA 288
>10_08_0982 -
22025279-22027277,22030256-22030488,22031205-22031344,
22032783-22032957
Length = 848
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 27 PEIIQVVEEETFKACSEKPLCVVSILPHIL-HCNAACRNDYISILKRLGDKYNS 185
PE ++ V E K C PL +VSI + + + ++ + SI K +G S
Sbjct: 261 PEELEDVMENILKRCGGLPLAIVSIASVLAGYTSPGSKDKWESIYKSIGSHMES 314
>01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901
Length = 623
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 287 NAKKLKFSTLRGSFSESGISEFLRGLSIRSRADCAGKRRR 406
+A ++ TLR +E+G E+LRGL + D A R R
Sbjct: 30 DAANVQRETLRRILAENGGVEYLRGLGLAGATDPATFRAR 69
>12_01_0103 - 801800-802283,804653-804763,804918-804997
Length = 224
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 283 NSHGRVTEPPQFQSARPESVAPQHQPIS 200
NSHG+ E P F S ++P QP S
Sbjct: 130 NSHGKTGELPTFLSPSASLLSPSMQPYS 157
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 252 SSKALVQSRLRRSISPYPSPHVCCC 178
SS AL+ + S+SP P+ H+C C
Sbjct: 24 SSAALLVFLILPSLSPSPAAHLCAC 48
>12_01_0294 +
2230539-2230870,2232179-2232574,2232676-2232834,
2233109-2233505
Length = 427
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 153 WRCSRCDRPRYN 118
WR SRCD PR+N
Sbjct: 102 WRPSRCDLPRFN 113
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 99 ILPHILHCNAACRNDYISILKRL 167
+L ILHCN +CR+ +++L L
Sbjct: 2133 LLFQILHCNRSCRDGALTVLYSL 2155
>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
Length = 856
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 27 PEIIQVVEEETFKACSEKPLCVVSI 101
P+I+Q V + K C PL ++SI
Sbjct: 360 PDILQEVSTDILKKCGGLPLAIISI 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,801,854
Number of Sequences: 37544
Number of extensions: 342568
Number of successful extensions: 1169
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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