Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B13
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.31 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.31 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   0.71 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   0.71 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   2.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   3.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   8.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.31
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 71  WHPDNYHGDEKKLAEKKFIDIAAAKEVLT 157
           +HP      E+ L  K+F   AA+KE L+
Sbjct: 392 YHPSTQEDSEEHLTPKRFHSRAASKEDLS 420


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.31
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 71  WHPDNYHGDEKKLAEKKFIDIAAAKEVLT 157
           +HP      E+ L  K+F   AA+KE L+
Sbjct: 392 YHPSTQEDSEEHLTPKRFHSRAASKEDLS 420


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 0.71
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 83  NYHGDEKKLAE---KKFIDIAAAKEVLTDPDKRA 175
           NY+ +  K+ E   K  ID+A+ +  +TD +K A
Sbjct: 392 NYYFESNKIDETTLKHLIDVASDRFFITDGEKAA 425


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 0.71
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 83  NYHGDEKKLAE---KKFIDIAAAKEVLTDPDKRA 175
           NY+ +  K+ E   K  ID+A+ +  +TD +K A
Sbjct: 392 NYYFESNKIDETTLKHLIDVASDRFFITDGEKAA 425


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = -3

Query: 217 LCLGVEGVRAGVEHRPLVWVRQHLFSSGDV 128
           LCL    ++   ++R + W ++H  +S ++
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKEHKMASMNI 74


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 68  KWHPDNYHG 94
           KW+PD+Y G
Sbjct: 83  KWNPDDYGG 91


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 180 STPARTPSTPR 212
           S+P R P TPR
Sbjct: 136 SSPPREPGTPR 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,386
Number of Sequences: 438
Number of extensions: 1126
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)