Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B12
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 244 3e-65
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 244 4e-65
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 148 3e-36
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 6e-07
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.84
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 30 1.5
06_02_0197 - 12912818-12913411,12913505-12913732 30 1.5
04_03_0232 - 13049649-13052807 29 3.4
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 244 bits (598), Expect = 3e-65
Identities = 111/146 (76%), Positives = 126/146 (86%)
Frame = +1
Query: 13 AIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGV 192
++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+
Sbjct: 168 SVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGI 226
Query: 193 EAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 372
EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPG
Sbjct: 227 EAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPG 286
Query: 373 VRFKVVKVANVSLLALYKEKKERPRS 450
VRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 287 VRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 240 bits (588), Expect = 5e-64
Identities = 109/141 (77%), Positives = 122/141 (86%)
Frame = +1
Query: 22 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 201
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 202 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 381
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 382 KVVKVANVSLLALYKEKKERP 444
KVVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 244 bits (597), Expect = 4e-65
Identities = 111/143 (77%), Positives = 124/143 (86%)
Frame = +1
Query: 22 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 201
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 202 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 381
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 382 KVVKVANVSLLALYKEKKERPRS 450
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 148 bits (358), Expect = 3e-36
Identities = 67/102 (65%), Positives = 77/102 (75%)
Frame = +1
Query: 28 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQP 207
K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 208 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 333
NSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +1
Query: 313 DEVLVAGFGRKGHAVGDIPGVRFKVVK 393
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.84
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 395 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 264
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RSRYR-NG*TSGYSHGAQARESSSRAAMGRQGIQKSP 113
R+ YR +G +GY HG + + SSR + R G+ +P
Sbjct: 184 RACYRVHGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 238 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 140
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -2
Query: 499 ASRRRQRVTHLSQCKPMTWASPSFL-CTEL 413
++R R RV HLSQC +++SP FL C+ L
Sbjct: 346 SNRSRLRVLHLSQC-TFSFSSPPFLGCSNL 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,815,447
Number of Sequences: 37544
Number of extensions: 406105
Number of successful extensions: 1114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -