Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B09
(250 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4YA27 Cluster: Pb-fam-2 protein; n=73; Eukaryota|Rep: ... 34 0.69
UniRef50_Q6D340 Cluster: Putative lipoprotein; n=4; Enterobacter... 31 6.5
UniRef50_Q7RPI2 Cluster: Putative splicing factor; n=1; Plasmodi... 30 8.5
UniRef50_Q4YHW5 Cluster: Pb-fam-2 protein; n=2; Plasmodium (Vinc... 30 8.5
UniRef50_Q8TUN8 Cluster: Predicted protein; n=1; Methanosarcina ... 30 8.5
>UniRef50_Q4YA27 Cluster: Pb-fam-2 protein; n=73; Eukaryota|Rep:
Pb-fam-2 protein - Plasmodium berghei
Length = 2335
Score = 33.9 bits (74), Expect = 0.69
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Frame = -2
Query: 168 VLNFMPFSNSSM*VFLKI-HYVAC*LLICLSLKY--HL---DICIIHFILFLVLNCKFQT 7
+LNF PFS VFL+I H + C LI ++ H+ +CI HF FLV++ F++
Sbjct: 1197 ILNFPPFS-----VFLEIFHVLKCVFLIFRDFQFSRHIPGPSVCISHFSRFLVISSFFKS 1251
Query: 6 S 4
S
Sbjct: 1252 S 1252
Score = 32.3 bits (70), Expect = 2.1
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Frame = -2
Query: 168 VLNFMPFSNSSM*VFLKI-HYVAC*LLICLSLKY--HL---DICIIHFILFLVLNCKFQT 7
+LNF PFS VFL I H + C LI ++ H+ +CI HF FLV++ F++
Sbjct: 95 LLNFPPFS-----VFLAIFHVLKCVFLIFRDFQFSRHIPGPSVCISHFSRFLVISSFFKS 149
Query: 6 S 4
S
Sbjct: 150 S 150
Score = 31.9 bits (69), Expect = 2.8
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = -2
Query: 165 LNFMPFSNSSM*VFLKI-HYVAC*LLICLSLKY--HL---DICIIHFILFLVLNCKFQTS 4
LNF PFS VFL I H + C LI ++ H+ +CI HF FLV++ F++S
Sbjct: 721 LNFPPFS-----VFLAIFHVLKCVFLIFRDFQFSRHIPGPSVCISHFSRFLVISSFFKSS 775
Score = 31.9 bits (69), Expect = 2.8
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = -2
Query: 165 LNFMPFSNSSM*VFLKI-HYVAC*LLICLSLKY--HL---DICIIHFILFLVLNCKFQTS 4
LNF PFS VFL I H + C LI ++ H+ +CI HF FLV++ F++S
Sbjct: 975 LNFPPFS-----VFLAIFHVLKCVFLIFRDFQFSRHIPGPSVCISHFSRFLVISSFFKSS 1029
Score = 31.9 bits (69), Expect = 2.8
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = -2
Query: 165 LNFMPFSNSSM*VFLKIHYVA-C*LLICLSLKY--HL---DICIIHFILFLVLNCKFQTS 4
LNF PFS VFL + V C LIC ++ H+ +CI HF FLV++ F++S
Sbjct: 1889 LNFPPFS-----VFLAMFPVLNCVFLICRDFQFSRHIPGPSVCISHFSRFLVISSFFKSS 1943
Score = 31.5 bits (68), Expect = 3.7
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = -2
Query: 165 LNFMPFSNSSM*VFLKI-HYVAC*LLICLSLKY--HL---DICIIHFILFLVLNCKFQTS 4
LNF PFS VFL I H + C LI ++ H+ +CI HF FLV++ F++S
Sbjct: 1617 LNFPPFS-----VFLDIFHVLKCVFLIFRDFQFSRHVPGPSVCISHFSRFLVISSFFKSS 1671
Score = 31.5 bits (68), Expect = 3.7
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = -2
Query: 165 LNFMPFSNSSM*VFLKI-HYVAC*LLICLSLKYH-----LDICIIHFILFLVLNCKFQTS 4
LNF PF VF I H + C LI ++ L +CI HF FLV++ F++S
Sbjct: 1724 LNFPPFL-----VFPAIFHVIKCVFLIFHDFQFSRHIPGLSVCISHFSRFLVISSFFKSS 1778
Query: 3 C 1
C
Sbjct: 1779 C 1779
Score = 30.3 bits (65), Expect = 8.5
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = -2
Query: 165 LNFMPFSNSSM*VFLKI-HYVAC*LLICLSLKY--HLD---ICIIHFILFLVLNCKFQTS 4
LN PFS VFL I H + C LI ++ H+ +CI HF FLV++ F++S
Sbjct: 18 LNIPPFS-----VFLPIFHVLKCVFLIFCDFQFSRHIPGPTVCIFHFSRFLVISSFFKSS 72
>UniRef50_Q6D340 Cluster: Putative lipoprotein; n=4;
Enterobacteriaceae|Rep: Putative lipoprotein - Erwinia
carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 184
Score = 30.7 bits (66), Expect = 6.5
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +3
Query: 63 LNGISMKGILTINTQHNGFSK 125
LNG++ +G+LT++ Q NGFS+
Sbjct: 71 LNGLAEQGLLTVSQQSNGFSR 91
>UniRef50_Q7RPI2 Cluster: Putative splicing factor; n=1; Plasmodium
yoelii yoelii|Rep: Putative splicing factor - Plasmodium
yoelii yoelii
Length = 404
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 105 QHNGFSKKLTLKNY*KA*NSKHESFNTQNFGELYT 209
+H+ SK+ L K +KHE + QN+GE+YT
Sbjct: 336 EHHKISKEEILIKKKKIQAAKHEQYRLQNWGEVYT 370
>UniRef50_Q4YHW5 Cluster: Pb-fam-2 protein; n=2; Plasmodium
(Vinckeia)|Rep: Pb-fam-2 protein - Plasmodium berghei
Length = 1153
Score = 30.3 bits (65), Expect = 8.5
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = -2
Query: 162 NFMPFSNSSM*VFLKI-HYVAC*LLICLSLKY--HL---DICIIHFILFLVLNCKFQTS 4
NF PFS VFL I H + C LI ++ H+ +CI HF FLV++ F++S
Sbjct: 689 NFPPFS-----VFLAIFHVLKCVFLIFRDFQFSRHIPGPSVCISHFSRFLVISSFFKSS 742
>UniRef50_Q8TUN8 Cluster: Predicted protein; n=1; Methanosarcina
acetivorans|Rep: Predicted protein - Methanosarcina
acetivorans
Length = 144
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 142 FFNVSFFENPLCCVLIVNMPFIEIPFRYMYYSFHSLPCVK 23
FFN+SFFE +PF +PF SF LP K
Sbjct: 69 FFNISFFEYCFSAYRFSRIPFFRLPF--FNISFFRLPFFK 106
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,718,461
Number of Sequences: 1657284
Number of extensions: 4072182
Number of successful extensions: 7167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7164
length of database: 575,637,011
effective HSP length: 61
effective length of database: 474,542,687
effective search space used: 9965396427
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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