Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B09
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   1.1  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    24   2.6  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    23   4.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    23   5.9  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    23   5.9  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    23   7.8  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    23   7.8  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 189  NFGELYTRCTILSNDENTN 245
            N GE++TRC++   D +TN
Sbjct: 1126 NVGEVFTRCSVEKIDYSTN 1144


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -2

Query: 225 IILCTECKVHQSFVY*SSRVLNFMPFSNSSM*VFLKIHYVAC*LLICLSLKYHLDIC 55
           I+    CK      Y +S+ +N M F N+     +K H+    LL+ +S      +C
Sbjct: 137 IVYANPCKAITYVRYAASKGINLMTFDNADELYKVKQHHPNSRLLLRISTDDSNSLC 193


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 108 HNGFSKKLTLKNY*KA*NSKHESFNTQNFGE 200
           HNGFSK L    + K+    H+S NT +  E
Sbjct: 11  HNGFSKFLHKLGFGKSKGKSHKS-NTSSIHE 40


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 102  TQHNGFSKKLTL 137
            TQHN ++KKL+L
Sbjct: 1416 TQHNAYNKKLSL 1427


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 112 MDFQKNLH*RITERHEIQNTRALIHKTL 195
           +DF KNL  RI   H + N ++ IH  L
Sbjct: 287 LDFTKNLLTRIKNLHPLTN-KSTIHSLL 313


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 91  NMPFIEIPFRYMYYSFHSLPCVK 23
           N PF+ + F Y     H L C+K
Sbjct: 250 NEPFLSVVFIYPQIKPHLLSCLK 272


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 109 CCVL-IVNMPFIEIPFR 62
           CCV  I+ MPF + P+R
Sbjct: 19  CCVCTILTMPFFKKPYR 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,094,325
Number of Sequences: 5004
Number of extensions: 20342
Number of successful extensions: 36
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)