Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B09
         (250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0427 - 3124209-3124307,3124453-3125240,3125510-3125867,312...    26   3.7  
11_04_0212 - 14919074-14919433,14919444-14920514                       26   4.8  

>02_01_0427 -
           3124209-3124307,3124453-3125240,3125510-3125867,
           3125902-3126567
          Length = 636

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 87  ILTINTQHNGFSKKLTLKNY*KA*NSKHESFNTQNFGELYTRCTIL 224
           ++TIN + N FS +L   N+    N K       NF   +  C +L
Sbjct: 305 LITINLRSNNFSGELVNVNFSNLPNLKALDLLWNNFSGSFPNCLLL 350


>11_04_0212 - 14919074-14919433,14919444-14920514
          Length = 476

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 67  FRYMYYSFHSLPCV 26
           F Y++ SFH +PCV
Sbjct: 208 FSYVFESFHGMPCV 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,039,737
Number of Sequences: 37544
Number of extensions: 98423
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)